Project name: 4KAQ

Status: done

Started: 2026-03-29 08:21:32
Settings
Chain sequence(s) H: QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSA
L: QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:29)
Show buried residues

Minimal score value
-3.1792
Maximal score value
2.0598
Average score
-0.4819
Total score value
-109.3985

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2430
2 V H -0.5193
3 Q H -1.0186
4 L H 0.0000
5 Q H -1.4032
6 Q H -0.9512
7 P H -0.7309
8 G H -0.6510
9 A H -0.0645
11 E H 0.1039
12 L H 0.9708
13 V H 0.0000
14 K H -1.5427
15 P H -1.1171
16 G H -1.1024
17 A H -0.8646
18 S H -0.8891
19 V H -0.6272
20 K H -1.2363
21 M H 0.0000
22 S H -0.6726
23 C H 0.0000
24 K H -1.3905
25 A H 0.0000
26 S H -0.8438
27 G H -0.7501
28 Y H -0.1987
29 T H -0.1558
30 F H 0.0000
35 T H -0.6047
36 S H -0.1845
37 Y H 0.3802
38 N H -0.3212
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.3261
45 T H 0.0000
46 P H -0.6741
47 G H -1.1961
48 R H -1.1479
49 G H -0.8160
50 L H 0.0000
51 E H -0.6103
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 A H 0.0000
56 I H 0.0000
57 Y H -0.6495
58 P H 0.0000
59 G H -1.2265
62 N H -1.9918
63 G H -1.8563
64 D H -2.2311
65 T H -1.0714
66 S H -0.9517
67 Y H -1.2413
68 N H -2.0430
69 Q H -2.8499
70 K H -2.9069
71 F H 0.0000
72 K H -2.8932
74 G H -1.9348
75 K H -1.5942
76 A H 0.0000
77 T H -0.7627
78 L H 0.0000
79 T H -0.5751
80 A H -0.7588
81 D H -1.2862
82 K H -1.7269
83 S H -0.9735
84 S H -0.8664
85 S H -0.9844
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3481
89 M H 0.0000
90 Q H -0.9380
91 L H 0.0000
92 S H -0.7757
93 S H -0.8281
94 L H 0.0000
95 T H -1.1986
96 S H -1.1753
97 E H -1.9898
98 D H 0.0000
99 S H -0.5034
100 A H 0.0000
101 V H 0.2334
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 S H 0.0000
108 T H 0.0000
109 Y H 2.0598
110 Y H 1.7984
111 G H 0.3347
112A G H 0.3250
112 D H 0.0000
113 W H 1.4328
114 Y H 0.8925
115 F H 0.0000
116 N H -0.0002
117 V H -0.0864
118 W H 0.0000
119 G H 0.0000
120 A H -0.3461
121 G H 0.0000
122 T H 0.0000
123 T H 0.1164
124 V H 0.0000
125 T H 0.1986
126 V H -0.4936
127 S H -0.3809
128 A H -0.4664
1 Q L -1.0602
2 I L 0.1383
3 V L 1.0914
4 L L 0.0000
5 S L -0.5910
6 Q L -0.5156
7 S L -0.4145
8 P L 0.1822
9 A L 0.4067
10 I L 1.2140
11 L L 0.5100
12 S L -0.3487
13 A L 0.0000
14 S L -1.7432
15 P L -1.8674
16 G L -2.1654
17 E L -2.7394
18 K L -2.9415
19 V L 0.0000
20 T L -0.5310
21 M L 0.0000
22 T L -0.6472
23 C L 0.0000
24 R L -1.7764
25 A L 0.0000
26 S L -0.2713
27 S L -0.4362
28 S L -0.6500
29 V L 0.0000
37 S L -0.2072
38 Y L 0.1873
39 I L 0.0000
40 H L 0.0000
41 W L 0.0000
42 F L 0.0000
43 Q L 0.0000
44 Q L -0.8673
45 K L -1.2184
46 P L -0.7655
47 G L -0.7162
48 S L -0.7232
49 S L -0.4882
50 P L 0.0000
51 K L -1.1339
52 P L -0.5068
53 W L 0.0000
54 I L 0.0000
55 Y L 0.1576
56 A L 0.0892
57 T L -0.2743
65 S L -0.5018
66 N L -0.7215
67 L L 0.1908
68 A L -0.3728
69 S L -0.4730
70 G L -0.2857
71 V L 0.0000
72 P L 0.5789
74 V L 1.3490
75 R L -0.4685
76 F L 0.0000
77 S L -0.1163
78 G L -0.4444
79 S L -0.5787
80 G L -0.8114
83 S L -0.7198
84 G L -0.7235
85 T L -0.9644
86 S L -1.1007
87 Y L 0.0000
88 S L -0.5753
89 L L 0.0000
90 T L -0.8015
91 I L 0.0000
92 S L -1.9475
93 R L -3.1792
94 V L 0.0000
95 E L -2.5838
96 A L -1.6800
97 E L -2.2037
98 D L 0.0000
99 A L -1.0710
100 A L 0.0000
101 T L -0.4694
102 Y L 0.0000
103 Y L -0.1735
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 W L 0.0412
108 T L -0.2432
109 S L -0.8640
114 N L -1.6954
115 P L -1.4774
116 P L 0.0000
117 T L -0.0571
118 F L 0.0000
119 G L 0.0000
120 G L -0.6385
121 G L -0.3381
122 T L 0.0000
123 K L -0.5411
124 L L 0.0000
125 E L -0.5016
126 I L -1.0237
127 K L -1.6744
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Laboratory of Theory of Biopolymers 2018