| Chain sequence(s) |
H: QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSA
L: QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:28)
[INFO] Main: Simulation completed successfully. (00:01:29)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.2430 | |
| 2 | V | H | -0.5193 | |
| 3 | Q | H | -1.0186 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.4032 | |
| 6 | Q | H | -0.9512 | |
| 7 | P | H | -0.7309 | |
| 8 | G | H | -0.6510 | |
| 9 | A | H | -0.0645 | |
| 11 | E | H | 0.1039 | |
| 12 | L | H | 0.9708 | |
| 13 | V | H | 0.0000 | |
| 14 | K | H | -1.5427 | |
| 15 | P | H | -1.1171 | |
| 16 | G | H | -1.1024 | |
| 17 | A | H | -0.8646 | |
| 18 | S | H | -0.8891 | |
| 19 | V | H | -0.6272 | |
| 20 | K | H | -1.2363 | |
| 21 | M | H | 0.0000 | |
| 22 | S | H | -0.6726 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.3905 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.8438 | |
| 27 | G | H | -0.7501 | |
| 28 | Y | H | -0.1987 | |
| 29 | T | H | -0.1558 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.6047 | |
| 36 | S | H | -0.1845 | |
| 37 | Y | H | 0.3802 | |
| 38 | N | H | -0.3212 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.3261 | |
| 45 | T | H | 0.0000 | |
| 46 | P | H | -0.6741 | |
| 47 | G | H | -1.1961 | |
| 48 | R | H | -1.1479 | |
| 49 | G | H | -0.8160 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.6103 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | A | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | -0.6495 | |
| 58 | P | H | 0.0000 | |
| 59 | G | H | -1.2265 | |
| 62 | N | H | -1.9918 | |
| 63 | G | H | -1.8563 | |
| 64 | D | H | -2.2311 | |
| 65 | T | H | -1.0714 | |
| 66 | S | H | -0.9517 | |
| 67 | Y | H | -1.2413 | |
| 68 | N | H | -2.0430 | |
| 69 | Q | H | -2.8499 | |
| 70 | K | H | -2.9069 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.8932 | |
| 74 | G | H | -1.9348 | |
| 75 | K | H | -1.5942 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.7627 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.5751 | |
| 80 | A | H | -0.7588 | |
| 81 | D | H | -1.2862 | |
| 82 | K | H | -1.7269 | |
| 83 | S | H | -0.9735 | |
| 84 | S | H | -0.8664 | |
| 85 | S | H | -0.9844 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3481 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.9380 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.7757 | |
| 93 | S | H | -0.8281 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.1986 | |
| 96 | S | H | -1.1753 | |
| 97 | E | H | -1.9898 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.5034 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.2334 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | S | H | 0.0000 | |
| 108 | T | H | 0.0000 | |
| 109 | Y | H | 2.0598 | |
| 110 | Y | H | 1.7984 | |
| 111 | G | H | 0.3347 | |
| 112A | G | H | 0.3250 | |
| 112 | D | H | 0.0000 | |
| 113 | W | H | 1.4328 | |
| 114 | Y | H | 0.8925 | |
| 115 | F | H | 0.0000 | |
| 116 | N | H | -0.0002 | |
| 117 | V | H | -0.0864 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | A | H | -0.3461 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | 0.1164 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.1986 | |
| 126 | V | H | -0.4936 | |
| 127 | S | H | -0.3809 | |
| 128 | A | H | -0.4664 | |
| 1 | Q | L | -1.0602 | |
| 2 | I | L | 0.1383 | |
| 3 | V | L | 1.0914 | |
| 4 | L | L | 0.0000 | |
| 5 | S | L | -0.5910 | |
| 6 | Q | L | -0.5156 | |
| 7 | S | L | -0.4145 | |
| 8 | P | L | 0.1822 | |
| 9 | A | L | 0.4067 | |
| 10 | I | L | 1.2140 | |
| 11 | L | L | 0.5100 | |
| 12 | S | L | -0.3487 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -1.7432 | |
| 15 | P | L | -1.8674 | |
| 16 | G | L | -2.1654 | |
| 17 | E | L | -2.7394 | |
| 18 | K | L | -2.9415 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5310 | |
| 21 | M | L | 0.0000 | |
| 22 | T | L | -0.6472 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -1.7764 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.2713 | |
| 27 | S | L | -0.4362 | |
| 28 | S | L | -0.6500 | |
| 29 | V | L | 0.0000 | |
| 37 | S | L | -0.2072 | |
| 38 | Y | L | 0.1873 | |
| 39 | I | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | F | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.8673 | |
| 45 | K | L | -1.2184 | |
| 46 | P | L | -0.7655 | |
| 47 | G | L | -0.7162 | |
| 48 | S | L | -0.7232 | |
| 49 | S | L | -0.4882 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1339 | |
| 52 | P | L | -0.5068 | |
| 53 | W | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.1576 | |
| 56 | A | L | 0.0892 | |
| 57 | T | L | -0.2743 | |
| 65 | S | L | -0.5018 | |
| 66 | N | L | -0.7215 | |
| 67 | L | L | 0.1908 | |
| 68 | A | L | -0.3728 | |
| 69 | S | L | -0.4730 | |
| 70 | G | L | -0.2857 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | 0.5789 | |
| 74 | V | L | 1.3490 | |
| 75 | R | L | -0.4685 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.1163 | |
| 78 | G | L | -0.4444 | |
| 79 | S | L | -0.5787 | |
| 80 | G | L | -0.8114 | |
| 83 | S | L | -0.7198 | |
| 84 | G | L | -0.7235 | |
| 85 | T | L | -0.9644 | |
| 86 | S | L | -1.1007 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.5753 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.8015 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.9475 | |
| 93 | R | L | -3.1792 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -2.5838 | |
| 96 | A | L | -1.6800 | |
| 97 | E | L | -2.2037 | |
| 98 | D | L | 0.0000 | |
| 99 | A | L | -1.0710 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.4694 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | -0.1735 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | W | L | 0.0412 | |
| 108 | T | L | -0.2432 | |
| 109 | S | L | -0.8640 | |
| 114 | N | L | -1.6954 | |
| 115 | P | L | -1.4774 | |
| 116 | P | L | 0.0000 | |
| 117 | T | L | -0.0571 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.6385 | |
| 121 | G | L | -0.3381 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.5411 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.5016 | |
| 126 | I | L | -1.0237 | |
| 127 | K | L | -1.6744 |