Project name: query_structure

Status: done

Started: 2026-03-17 01:11:52
Settings
Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGGLRRLLRSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:51)
Show buried residues

Minimal score value
-3.4814
Maximal score value
1.6101
Average score
-0.7753
Total score value
-72.8745

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6101
2 S A 0.0202
3 D A -0.9384
4 V A -1.2493
5 P A 0.0000
6 R A -3.3549
7 D A -3.4814
8 L A 0.0000
9 E A -2.1232
10 V A 0.1177
11 V A 1.5451
12 A A 0.9022
13 A A 0.3195
14 T A -0.5244
15 P A -1.1214
16 T A -1.0008
17 S A -0.5286
18 L A 0.0000
19 L A 0.7594
20 I A 0.0000
21 S A -1.1074
22 W A 0.0000
23 D A -3.2388
24 A A -1.6777
25 P A -0.5987
26 A A 0.2829
27 V A 0.3391
28 T A -0.4435
29 V A -1.1179
30 R A -1.6542
31 Y A -1.2484
32 Y A 0.0000
33 R A -0.9041
34 I A 0.0000
35 T A -0.4070
36 Y A -0.2384
37 G A 0.0000
38 E A -1.5805
39 T A -1.2379
40 G A -1.2365
41 G A -1.4238
42 N A -1.5602
43 S A -0.9088
44 P A -0.3319
45 V A 0.4514
46 Q A -0.8071
47 E A -1.2242
48 F A -0.4135
49 T A -0.1896
50 V A -0.5036
51 P A -1.0222
52 G A -1.2670
53 S A -1.1382
54 K A -1.7013
55 S A -1.1464
56 T A -0.5974
57 A A 0.0000
58 T A 0.2589
59 I A 0.0000
60 S A -0.6599
61 G A -1.0297
62 L A 0.0000
63 K A -2.3675
64 P A -1.6626
65 G A -1.4459
66 V A -1.4023
67 D A -2.0578
68 Y A 0.0000
69 T A -0.7578
70 I A 0.0000
71 T A -0.3053
72 V A 0.0000
73 Y A -0.9391
74 A A 0.0000
75 V A 0.0000
76 T A -0.8577
77 G A -0.8131
78 G A -0.7490
79 L A 0.1731
80 R A -1.8906
81 R A -1.8615
82 L A -0.1156
83 L A -0.6446
84 R A -1.9133
85 S A 0.0000
86 K A -2.1166
87 P A -1.3146
88 I A -0.6457
89 S A -0.8567
90 I A -0.7263
91 N A -1.7072
92 Y A -1.4378
93 R A -2.5072
94 T A -1.6201
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Laboratory of Theory of Biopolymers 2018