Project name: query_structure

Status: done

Started: 2026-03-16 23:00:19
Settings
Chain sequence(s) A: CKGKGAPCRKTMYDCCSGSCGRRGKC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:37)
Show buried residues

Minimal score value
-3.6237
Maximal score value
1.1327
Average score
-1.3969
Total score value
-36.3203

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.7396
2 K A -0.6330
3 G A -1.3820
4 K A -2.3519
5 G A -2.1442
6 A A -1.5973
7 P A -1.7683
8 C A -2.2729
9 R A -2.4094
10 K A -2.7834
11 T A -0.5442
12 M A 0.5787
13 Y A 1.1327
14 D A 0.0000
15 C A 0.0000
16 C A 0.4409
17 S A -0.3580
18 G A -0.5605
19 S A -1.2640
20 C A 0.0000
21 G A -2.5816
22 R A -3.4118
23 R A -3.5844
24 G A -3.2759
25 K A -3.6237
26 C A -2.6657
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Laboratory of Theory of Biopolymers 2018