Project name: Amrita

Status: done

Started: 2026-05-21 06:30:35
Settings
Chain sequence(s) A: KKDDWSSFY
B: KDDWSSFY
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:11)
Show buried residues

Minimal score value
-1.5215
Maximal score value
2.4118
Average score
0.6224
Total score value
7.4686

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.3288
2 D A -1.0309
3 W A 1.5439
4 S A 1.3931
5 F A 1.8244
6 Y A 0.9839
1 K B -1.5215
2 D B -1.2502
3 W B 1.4229
4 S B 1.7575
5 F B 2.4118
6 Y B 1.2625
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Laboratory of Theory of Biopolymers 2018