| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLTLSCAASGRTFSSSAMGWFRQAPGKEREFVAGISSSGGTTYYADPVEGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAVLGTYYGFPSSPTGYNYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:05)
[INFO] Main: Simulation completed successfully. (00:02:07)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.8450 | |
| 2 | V | A | 0.0000 | |
| 3 | Q | A | -1.2485 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1427 | |
| 6 | E | A | 0.1040 | |
| 7 | S | A | -0.1910 | |
| 8 | G | A | -0.4677 | |
| 9 | G | A | -0.4700 | |
| 10 | G | A | 0.1406 | |
| 11 | L | A | 1.0684 | |
| 12 | V | A | 0.0793 | |
| 13 | Q | A | -1.1703 | |
| 14 | A | A | -1.3439 | |
| 15 | G | A | -1.2818 | |
| 16 | G | A | -0.8786 | |
| 17 | S | A | -0.8017 | |
| 18 | L | A | -0.1332 | |
| 19 | T | A | -0.2389 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | 0.1445 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1480 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.3801 | |
| 26 | G | A | -2.0900 | |
| 27 | R | A | -2.5106 | |
| 28 | T | A | -1.3901 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.3518 | |
| 31 | S | A | -0.7157 | |
| 32 | S | A | 0.0000 | |
| 33 | A | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.7930 | |
| 40 | A | A | -1.8187 | |
| 41 | P | A | -1.3351 | |
| 42 | G | A | -1.9007 | |
| 43 | K | A | -3.1480 | |
| 44 | E | A | -3.2585 | |
| 45 | R | A | -2.2381 | |
| 46 | E | A | -1.4461 | |
| 47 | F | A | -0.4729 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | 0.1339 | |
| 53 | S | A | -0.2804 | |
| 54 | S | A | -0.7608 | |
| 55 | G | A | -0.8296 | |
| 56 | G | A | -0.7167 | |
| 57 | T | A | -0.0091 | |
| 58 | T | A | 0.4681 | |
| 59 | Y | A | 0.9086 | |
| 60 | Y | A | -0.3431 | |
| 61 | A | A | -1.1466 | |
| 62 | D | A | -2.3828 | |
| 63 | P | A | -1.9246 | |
| 64 | V | A | 0.0000 | |
| 65 | E | A | -2.5926 | |
| 66 | G | A | -1.8394 | |
| 67 | R | A | -1.4904 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.4432 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4000 | |
| 72 | R | A | -1.0180 | |
| 73 | D | A | -1.5950 | |
| 74 | N | A | -1.9264 | |
| 75 | A | A | -1.5044 | |
| 76 | K | A | -2.4021 | |
| 77 | N | A | -2.1682 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.1159 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.4179 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.0904 | |
| 85 | S | A | -1.1501 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.0285 | |
| 88 | P | A | -1.6870 | |
| 89 | E | A | -2.2032 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.8069 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.3874 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1639 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | V | A | 0.0000 | |
| 100 | L | A | 0.3810 | |
| 101 | G | A | 0.2373 | |
| 102 | T | A | 0.8289 | |
| 103 | Y | A | 1.8210 | |
| 104 | Y | A | 1.8050 | |
| 105 | G | A | 1.0912 | |
| 106 | F | A | 0.7329 | |
| 107 | P | A | 0.2963 | |
| 108 | S | A | -0.0860 | |
| 109 | S | A | -0.3821 | |
| 110 | P | A | -0.5153 | |
| 111 | T | A | -0.4687 | |
| 112 | G | A | -0.3053 | |
| 113 | Y | A | 0.0000 | |
| 114 | N | A | -0.9883 | |
| 115 | Y | A | -0.3876 | |
| 116 | W | A | -0.0546 | |
| 117 | G | A | -0.1134 | |
| 118 | Q | A | -0.8499 | |
| 119 | G | A | -0.5419 | |
| 120 | T | A | -0.7060 | |
| 121 | Q | A | -1.0003 | |
| 122 | V | A | 0.0000 | |
| 123 | T | A | -0.1870 | |
| 124 | V | A | 0.0000 | |
| 125 | S | A | -0.6455 | |
| 126 | S | A | -0.7614 |