Project name: test

Status: done

Started: 2025-03-05 19:41:54
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Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
C: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
B: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
E: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
D: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
F: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A,C,B,E,D,F
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:15)
Show buried residues

Minimal score value
-4.1873
Maximal score value
2.7512
Average score
-0.7427
Total score value
-187.1632

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -2.8876
2 A A -2.2510
3 E A -2.7926
4 F A -1.5467
5 R A -3.0956
6 H A -2.9752
7 D A -3.2928
8 S A -2.0876
9 G A -1.2768
10 Y A 0.1350
11 E A -0.7505
12 V A 0.6157
13 H A -0.7228
14 H A -1.6584
15 Q A -1.6898
16 K A -1.8662
17 L A 0.0000
18 V A 0.4380
19 F A 0.8009
20 F A -0.4032
21 A A -1.4486
22 E A -3.1468
23 D A -3.0039
24 V A -0.5825
25 G A -0.6522
26 S A -1.0560
27 N A 0.0000
28 K A -1.9807
29 G A -0.2605
30 A A 0.0000
31 I A 0.9074
32 I A 1.0193
33 G A 0.7633
34 L A 1.1413
35 M A 0.6463
36 V A 0.5318
37 G A -0.5044
38 G A 0.1476
39 V A 1.6489
40 V A 2.7507
41 I A 1.3622
42 A A 0.4093
1 D B -3.5320
2 A B -2.1408
3 E B -2.2864
4 F B -1.0590
5 R B -2.7747
6 H B -2.7449
7 D B -4.0705
8 S B -2.2624
9 G B -1.1410
10 Y B 0.3145
11 E B -0.2527
12 V B 0.0000
13 H B -1.1425
14 H B -1.8370
15 Q B 0.0000
16 K B -1.4550
17 L B 0.0000
18 V B 0.0000
19 F B 0.0000
20 F B 0.0000
21 A B -2.1231
22 E B -4.1873
23 D B -3.9476
24 V B 0.0000
25 G B -1.1328
26 S B -1.3153
27 N B 0.0000
28 K B -1.7246
29 G B 0.0000
30 A B 0.0000
31 I B 0.0000
32 I B 0.0000
33 G B 0.0000
34 L B 0.0000
35 M B 0.0000
36 V B 0.0000
37 G B 0.0000
38 G B 0.6054
39 V B 0.0000
40 V B 2.6856
41 I B 0.0000
42 A B 0.5631
1 D C -2.4961
2 A C -1.3488
3 E C -1.2537
4 F C 0.2320
5 R C -1.9671
6 H C -2.1405
7 D C -2.8773
8 S C -1.8114
9 G C -0.7493
10 Y C 0.2125
11 E C -0.6920
12 V C 0.4048
13 H C -0.7867
14 H C -1.2860
15 Q C -0.4905
16 K C -0.2971
17 L C 0.7793
18 V C 1.3303
19 F C 0.8427
20 F C -0.4994
21 A C -1.3484
22 E C -3.2897
23 D C -3.3643
24 V C -2.4938
25 G C -1.5443
26 S C -1.4613
27 N C -1.8215
28 K C -1.8395
29 G C 0.0000
30 A C -0.2856
31 I C 0.6021
32 I C 1.0518
33 G C 0.6342
34 L C 0.8023
35 M C 0.5096
36 V C 0.5704
37 G C -0.2881
38 G C 0.1957
39 V C 1.4108
40 V C 2.5655
41 I C 1.3889
42 A C 0.5466
1 D D -2.9466
2 A D -2.3693
3 E D -2.9313
4 F D -1.6873
5 R D -3.0350
6 H D -2.8371
7 D D -3.2323
8 S D -2.2079
9 G D -1.4626
10 Y D -1.1985
11 E D -1.2852
12 V D 0.0979
13 H D -1.7550
14 H D -2.0575
15 Q D -1.9615
16 K D -2.4677
17 L D 0.0000
18 V D 0.3691
19 F D 0.7168
20 F D -0.4056
21 A D -1.4409
22 E D -3.1218
23 D D -2.9872
24 V D -0.5496
25 G D -0.6324
26 S D -1.0637
27 N D 0.0000
28 K D -2.0155
29 G D -0.2736
30 A D 0.0000
31 I D 0.9374
32 I D 0.9644
33 G D 0.6357
34 L D 0.9342
35 M D 0.6631
36 V D 0.7100
37 G D -0.1605
38 G D 0.4069
39 V D 1.7510
40 V D 2.7512
41 I D 1.3527
42 A D 0.3930
1 D E -3.6434
2 A E -2.3700
3 E E -2.6701
4 F E -1.3086
5 R E -2.8081
6 H E -2.8186
7 D E -3.9813
8 S E -2.1308
9 G E -0.8851
10 Y E 0.4143
11 E E -1.0152
12 V E -1.4847
13 H E -1.8485
14 H E -1.8314
15 Q E 0.0000
16 K E -1.7645
17 L E 0.0000
18 V E 0.0000
19 F E 0.0000
20 F E 0.0000
21 A E -2.1376
22 E E -4.1871
23 D E -3.9704
24 V E 0.0000
25 G E -1.1464
26 S E -1.3775
27 N E 0.0000
28 K E -1.8273
29 G E 0.0000
30 A E 0.0000
31 I E 0.0000
32 I E 0.0000
33 G E 0.0000
34 L E 0.0000
35 M E 0.0000
36 V E 0.0000
37 G E 0.0000
38 G E 0.6065
39 V E 0.0000
40 V E 2.6786
41 I E 0.0000
42 A E 0.5388
1 D F -2.5784
2 A F -1.5070
3 E F -1.5309
4 F F 0.1071
5 R F -1.9067
6 H F -1.9624
7 D F -2.7283
8 S F -1.3875
9 G F -0.5801
10 Y F 0.1769
11 E F -1.0664
12 V F -0.8545
13 H F -1.7042
14 H F -1.7781
15 Q F -1.2909
16 K F -0.7322
17 L F 0.6554
18 V F 1.4378
19 F F 0.9343
20 F F -0.5659
21 A F -1.3475
22 E F -3.2967
23 D F -3.3852
24 V F -2.5296
25 G F -1.5853
26 S F -1.5330
27 N F -1.8295
28 K F -1.8565
29 G F 0.0000
30 A F -0.1486
31 I F 0.9258
32 I F 1.2877
33 G F 0.8432
34 L F 0.9808
35 M F 1.0309
36 V F 0.7509
37 G F -0.2745
38 G F 0.1229
39 V F 1.3396
40 V F 2.5435
41 I F 1.3908
42 A F 0.5683
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Laboratory of Theory of Biopolymers 2018