Project name: query_structure

Status: done

Started: 2026-03-17 00:54:21
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLKLSCAASGYFYSSNYCLGWFRQAPGKEREGVAQINIAPGRIYYADSVKGRFTISRDNAKNTVYLQMDSLKPEDTAIYYCASTAGNMYYGLRGPADFDYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:20)
Show buried residues

Minimal score value
-3.3349
Maximal score value
1.6569
Average score
-0.602
Total score value
-76.4571

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.1027
2 V A -0.2516
3 Q A -0.6421
4 L A 0.0000
5 V A 0.7794
6 E A 0.0000
7 S A -0.5099
8 G A -1.1793
9 G A -1.1333
10 G A -0.9298
11 S A -0.7248
12 V A -0.7650
13 Q A -1.6006
14 A A -1.6678
15 G A -1.3961
16 G A -1.1440
17 S A -1.2941
18 L A -1.1400
19 K A -1.9770
20 L A 0.0000
21 S A -0.3470
22 C A 0.0000
23 A A -0.2965
24 A A -0.1194
25 S A -0.3242
26 G A -0.0229
27 Y A 1.3757
28 F A 0.0000
29 Y A 1.3787
30 S A 0.3388
31 S A -0.0649
32 N A -0.1359
33 Y A 0.0605
34 C A 0.0000
35 L A 0.0000
36 G A 0.0000
37 W A 0.0000
38 F A 0.0000
39 R A -1.1333
40 Q A -1.7612
41 A A -1.8258
42 P A -1.3361
43 G A -1.9052
44 K A -3.2196
45 E A -3.3349
46 R A -2.3633
47 E A -1.7618
48 G A -0.7063
49 V A 0.0000
50 A A 0.0000
51 Q A 0.0000
52 I A 0.0000
53 N A 0.0000
54 I A 0.5482
55 A A 0.0305
56 P A -0.1195
57 G A -0.7027
58 R A -0.7680
59 I A 0.8597
60 Y A 0.3642
61 Y A -0.2858
62 A A 0.0000
63 D A -2.3952
64 S A -1.8221
65 V A 0.0000
66 K A -2.5501
67 G A -1.7987
68 R A -1.5542
69 F A 0.0000
70 T A -0.5925
71 I A 0.0000
72 S A -0.1773
73 R A -0.7761
74 D A -1.4739
75 N A -1.3557
76 A A -1.1876
77 K A -2.2675
78 N A -1.3544
79 T A -1.0008
80 V A 0.0000
81 Y A -0.4059
82 L A 0.0000
83 Q A -1.1131
84 M A 0.0000
85 D A -1.6503
86 S A -1.3524
87 L A 0.0000
88 K A -2.3375
89 P A -1.8469
90 E A -2.2917
91 D A 0.0000
92 T A -1.0993
93 A A 0.0000
94 I A -0.3400
95 Y A 0.0000
96 Y A -0.2035
97 C A 0.0000
98 A A 0.0000
99 S A 0.0000
100 T A 0.0000
101 A A -0.7408
102 G A -0.8428
103 N A -0.9195
104 M A 0.5281
105 Y A 1.6569
106 Y A 1.5261
107 G A 0.6759
108 L A 0.4200
109 R A -0.3867
110 G A -0.7091
111 P A -0.9516
112 A A -0.8902
113 D A -1.3695
114 F A 0.0000
115 D A -1.6541
116 Y A -0.4116
117 W A -0.0736
118 G A -0.0764
119 Q A -0.8726
120 G A 0.0000
121 T A 0.0000
122 Q A -1.2422
123 V A 0.0000
124 T A -0.9432
125 V A 0.0000
126 S A -1.1338
127 S A -0.8430
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Laboratory of Theory of Biopolymers 2018