| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLKLSCAASGYFYSSNYCLGWFRQAPGKEREGVAQINIAPGRIYYADSVKGRFTISRDNAKNTVYLQMDSLKPEDTAIYYCASTAGNMYYGLRGPADFDYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:19)
[INFO] Main: Simulation completed successfully. (00:01:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.1027 | |
| 2 | V | A | -0.2516 | |
| 3 | Q | A | -0.6421 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7794 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5099 | |
| 8 | G | A | -1.1793 | |
| 9 | G | A | -1.1333 | |
| 10 | G | A | -0.9298 | |
| 11 | S | A | -0.7248 | |
| 12 | V | A | -0.7650 | |
| 13 | Q | A | -1.6006 | |
| 14 | A | A | -1.6678 | |
| 15 | G | A | -1.3961 | |
| 16 | G | A | -1.1440 | |
| 17 | S | A | -1.2941 | |
| 18 | L | A | -1.1400 | |
| 19 | K | A | -1.9770 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3470 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2965 | |
| 24 | A | A | -0.1194 | |
| 25 | S | A | -0.3242 | |
| 26 | G | A | -0.0229 | |
| 27 | Y | A | 1.3757 | |
| 28 | F | A | 0.0000 | |
| 29 | Y | A | 1.3787 | |
| 30 | S | A | 0.3388 | |
| 31 | S | A | -0.0649 | |
| 32 | N | A | -0.1359 | |
| 33 | Y | A | 0.0605 | |
| 34 | C | A | 0.0000 | |
| 35 | L | A | 0.0000 | |
| 36 | G | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | F | A | 0.0000 | |
| 39 | R | A | -1.1333 | |
| 40 | Q | A | -1.7612 | |
| 41 | A | A | -1.8258 | |
| 42 | P | A | -1.3361 | |
| 43 | G | A | -1.9052 | |
| 44 | K | A | -3.2196 | |
| 45 | E | A | -3.3349 | |
| 46 | R | A | -2.3633 | |
| 47 | E | A | -1.7618 | |
| 48 | G | A | -0.7063 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | Q | A | 0.0000 | |
| 52 | I | A | 0.0000 | |
| 53 | N | A | 0.0000 | |
| 54 | I | A | 0.5482 | |
| 55 | A | A | 0.0305 | |
| 56 | P | A | -0.1195 | |
| 57 | G | A | -0.7027 | |
| 58 | R | A | -0.7680 | |
| 59 | I | A | 0.8597 | |
| 60 | Y | A | 0.3642 | |
| 61 | Y | A | -0.2858 | |
| 62 | A | A | 0.0000 | |
| 63 | D | A | -2.3952 | |
| 64 | S | A | -1.8221 | |
| 65 | V | A | 0.0000 | |
| 66 | K | A | -2.5501 | |
| 67 | G | A | -1.7987 | |
| 68 | R | A | -1.5542 | |
| 69 | F | A | 0.0000 | |
| 70 | T | A | -0.5925 | |
| 71 | I | A | 0.0000 | |
| 72 | S | A | -0.1773 | |
| 73 | R | A | -0.7761 | |
| 74 | D | A | -1.4739 | |
| 75 | N | A | -1.3557 | |
| 76 | A | A | -1.1876 | |
| 77 | K | A | -2.2675 | |
| 78 | N | A | -1.3544 | |
| 79 | T | A | -1.0008 | |
| 80 | V | A | 0.0000 | |
| 81 | Y | A | -0.4059 | |
| 82 | L | A | 0.0000 | |
| 83 | Q | A | -1.1131 | |
| 84 | M | A | 0.0000 | |
| 85 | D | A | -1.6503 | |
| 86 | S | A | -1.3524 | |
| 87 | L | A | 0.0000 | |
| 88 | K | A | -2.3375 | |
| 89 | P | A | -1.8469 | |
| 90 | E | A | -2.2917 | |
| 91 | D | A | 0.0000 | |
| 92 | T | A | -1.0993 | |
| 93 | A | A | 0.0000 | |
| 94 | I | A | -0.3400 | |
| 95 | Y | A | 0.0000 | |
| 96 | Y | A | -0.2035 | |
| 97 | C | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | S | A | 0.0000 | |
| 100 | T | A | 0.0000 | |
| 101 | A | A | -0.7408 | |
| 102 | G | A | -0.8428 | |
| 103 | N | A | -0.9195 | |
| 104 | M | A | 0.5281 | |
| 105 | Y | A | 1.6569 | |
| 106 | Y | A | 1.5261 | |
| 107 | G | A | 0.6759 | |
| 108 | L | A | 0.4200 | |
| 109 | R | A | -0.3867 | |
| 110 | G | A | -0.7091 | |
| 111 | P | A | -0.9516 | |
| 112 | A | A | -0.8902 | |
| 113 | D | A | -1.3695 | |
| 114 | F | A | 0.0000 | |
| 115 | D | A | -1.6541 | |
| 116 | Y | A | -0.4116 | |
| 117 | W | A | -0.0736 | |
| 118 | G | A | -0.0764 | |
| 119 | Q | A | -0.8726 | |
| 120 | G | A | 0.0000 | |
| 121 | T | A | 0.0000 | |
| 122 | Q | A | -1.2422 | |
| 123 | V | A | 0.0000 | |
| 124 | T | A | -0.9432 | |
| 125 | V | A | 0.0000 | |
| 126 | S | A | -1.1338 | |
| 127 | S | A | -0.8430 |