Project name: PPP

Status: done

Started: 2025-07-25 02:43:15
Settings
Chain sequence(s) A: ALILLMDRTGDDMDYEYDWQDNEMQALHFGKMHLNSSGRQGTGMIRKDGDQGAGEGRDAERLRQKHSDR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-4.7323
Maximal score value
0.9749
Average score
-1.672
Total score value
-115.3651

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.2776
2 L A 0.8195
3 I A -0.0289
4 L A 0.9749
5 L A 0.2305
6 M A 0.0000
7 D A -2.6582
8 R A -2.9585
9 T A 0.0000
10 G A -3.0398
11 D A -3.5865
12 D A -2.7025
13 M A 0.0000
14 D A -2.1835
15 Y A -1.2050
16 E A 0.0000
17 Y A -1.7202
18 D A -2.0837
19 W A -0.5510
20 Q A -1.8459
21 D A -2.6610
22 N A -1.7801
23 E A -1.8627
24 M A -0.0475
25 Q A -0.5834
26 A A 0.0000
27 L A -0.5323
28 H A -0.2957
29 F A 0.1471
30 G A 0.0000
31 K A -1.7213
32 M A -0.3742
33 H A -1.1153
34 L A -1.6574
35 N A -2.1151
36 S A -1.7890
37 S A 0.0000
38 G A -2.0902
39 R A -3.0932
40 Q A -2.3074
41 G A -1.2633
42 T A -0.7345
43 G A -0.1501
44 M A 0.1033
45 I A 0.0467
46 R A -2.5205
47 K A -2.7554
48 D A 0.0000
49 G A -2.0942
50 D A -3.2979
51 Q A -2.8867
52 G A 0.0000
53 A A -2.0125
54 G A -2.5649
55 E A -3.8201
56 G A -3.1349
57 R A -4.2506
58 D A -4.4178
59 A A 0.0000
60 E A -4.7323
61 R A -4.6374
62 L A -3.1500
63 R A -3.4703
64 Q A -4.0143
65 K A -3.6026
66 H A 0.0000
67 S A -2.6783
68 D A -3.5025
69 R A -3.1289
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Laboratory of Theory of Biopolymers 2018