| Chain sequence(s) |
A: QVQLQESGGGLVQPGGSLRLSCAASGFTLSTRVMSWVRQAPGKGLEGVASIYSGGDTYYADSVKGRFTISRDNAKNTLYLQMNNLKTEDSAMYYCALGSQKGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:28)
[INFO] Main: Simulation completed successfully. (00:01:29)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2224 | |
| 2 | V | A | -0.6452 | |
| 3 | Q | A | -1.6832 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.3151 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0478 | |
| 8 | G | A | -1.1762 | |
| 9 | G | A | -0.8195 | |
| 10 | G | A | -0.0402 | |
| 11 | L | A | 1.0372 | |
| 12 | V | A | -0.0240 | |
| 13 | Q | A | -1.4893 | |
| 14 | P | A | -1.9821 | |
| 15 | G | A | -2.0775 | |
| 16 | G | A | -1.5072 | |
| 17 | S | A | -1.7515 | |
| 18 | L | A | -1.3273 | |
| 19 | R | A | -2.3856 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8129 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.8421 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7666 | |
| 26 | G | A | -0.7469 | |
| 27 | F | A | -0.3983 | |
| 28 | T | A | -0.7189 | |
| 29 | L | A | 0.0000 | |
| 30 | S | A | -0.9204 | |
| 31 | T | A | -0.6231 | |
| 32 | R | A | -0.7688 | |
| 33 | V | A | 0.2094 | |
| 34 | M | A | 0.0000 | |
| 35 | S | A | 0.1456 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0571 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.8877 | |
| 40 | A | A | -1.3496 | |
| 41 | P | A | -1.1673 | |
| 42 | G | A | -1.4700 | |
| 43 | K | A | -2.1352 | |
| 44 | G | A | -1.1066 | |
| 45 | L | A | 0.1647 | |
| 46 | E | A | -0.3063 | |
| 47 | G | A | -0.0719 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | S | A | 0.4243 | |
| 51 | I | A | 0.0000 | |
| 52 | Y | A | 0.0729 | |
| 53 | S | A | -0.5840 | |
| 54 | G | A | -0.9816 | |
| 55 | G | A | -1.0501 | |
| 56 | D | A | -1.4913 | |
| 57 | T | A | -0.1770 | |
| 58 | Y | A | 0.4620 | |
| 59 | Y | A | -0.3899 | |
| 60 | A | A | 0.0000 | |
| 61 | D | A | -2.3284 | |
| 62 | S | A | -1.8254 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4518 | |
| 65 | G | A | -1.9904 | |
| 66 | R | A | -2.0645 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.9651 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.7332 | |
| 71 | R | A | -1.3348 | |
| 72 | D | A | -2.0187 | |
| 73 | N | A | -2.3563 | |
| 74 | A | A | -1.7392 | |
| 75 | K | A | -2.4606 | |
| 76 | N | A | -1.8172 | |
| 77 | T | A | -1.3968 | |
| 78 | L | A | 0.0000 | |
| 79 | Y | A | -0.7960 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.7692 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -2.8068 | |
| 84 | N | A | -2.7466 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.8663 | |
| 87 | T | A | -1.9316 | |
| 88 | E | A | -2.3623 | |
| 89 | D | A | 0.0000 | |
| 90 | S | A | -0.9701 | |
| 91 | A | A | 0.0000 | |
| 92 | M | A | -0.4128 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.6297 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | L | A | 0.0000 | |
| 98 | G | A | -0.9569 | |
| 99 | S | A | -1.0149 | |
| 100 | Q | A | -1.4839 | |
| 101 | K | A | -1.8597 | |
| 102 | G | A | -1.5609 | |
| 103 | Q | A | -1.7928 | |
| 104 | G | A | 0.0000 | |
| 105 | T | A | -1.0287 | |
| 106 | Q | A | -1.2054 | |
| 107 | V | A | 0.0000 | |
| 108 | T | A | -0.3356 | |
| 109 | V | A | 0.0000 | |
| 110 | S | A | -0.6879 | |
| 111 | S | A | -0.4913 |