Project name: query_structure

Status: done

Started: 2026-03-17 00:29:05
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Chain sequence(s) A: QVQLQESGGGLVQPGGSLRLSCAASGFTLSTRVMSWVRQAPGKGLEGVASIYSGGDTYYADSVKGRFTISRDNAKNTLYLQMNNLKTEDSAMYYCALGSQKGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:29)
Show buried residues

Minimal score value
-2.8663
Maximal score value
1.0372
Average score
-0.8367
Total score value
-92.8792

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2224
2 V A -0.6452
3 Q A -1.6832
4 L A 0.0000
5 Q A -1.3151
6 E A 0.0000
7 S A -1.0478
8 G A -1.1762
9 G A -0.8195
10 G A -0.0402
11 L A 1.0372
12 V A -0.0240
13 Q A -1.4893
14 P A -1.9821
15 G A -2.0775
16 G A -1.5072
17 S A -1.7515
18 L A -1.3273
19 R A -2.3856
20 L A 0.0000
21 S A -0.8129
22 C A 0.0000
23 A A -0.8421
24 A A 0.0000
25 S A -0.7666
26 G A -0.7469
27 F A -0.3983
28 T A -0.7189
29 L A 0.0000
30 S A -0.9204
31 T A -0.6231
32 R A -0.7688
33 V A 0.2094
34 M A 0.0000
35 S A 0.1456
36 W A 0.0000
37 V A 0.0571
38 R A 0.0000
39 Q A -0.8877
40 A A -1.3496
41 P A -1.1673
42 G A -1.4700
43 K A -2.1352
44 G A -1.1066
45 L A 0.1647
46 E A -0.3063
47 G A -0.0719
48 V A 0.0000
49 A A 0.0000
50 S A 0.4243
51 I A 0.0000
52 Y A 0.0729
53 S A -0.5840
54 G A -0.9816
55 G A -1.0501
56 D A -1.4913
57 T A -0.1770
58 Y A 0.4620
59 Y A -0.3899
60 A A 0.0000
61 D A -2.3284
62 S A -1.8254
63 V A 0.0000
64 K A -2.4518
65 G A -1.9904
66 R A -2.0645
67 F A 0.0000
68 T A -0.9651
69 I A 0.0000
70 S A -0.7332
71 R A -1.3348
72 D A -2.0187
73 N A -2.3563
74 A A -1.7392
75 K A -2.4606
76 N A -1.8172
77 T A -1.3968
78 L A 0.0000
79 Y A -0.7960
80 L A 0.0000
81 Q A -1.7692
82 M A 0.0000
83 N A -2.8068
84 N A -2.7466
85 L A 0.0000
86 K A -2.8663
87 T A -1.9316
88 E A -2.3623
89 D A 0.0000
90 S A -0.9701
91 A A 0.0000
92 M A -0.4128
93 Y A 0.0000
94 Y A -0.6297
95 C A 0.0000
96 A A 0.0000
97 L A 0.0000
98 G A -0.9569
99 S A -1.0149
100 Q A -1.4839
101 K A -1.8597
102 G A -1.5609
103 Q A -1.7928
104 G A 0.0000
105 T A -1.0287
106 Q A -1.2054
107 V A 0.0000
108 T A -0.3356
109 V A 0.0000
110 S A -0.6879
111 S A -0.4913
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Laboratory of Theory of Biopolymers 2018