| Chain sequence(s) |
A: NNQQNY
B: VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:16)
[INFO] Main: Simulation completed successfully. (00:00:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | N | A | -2.0626 | |
| 2 | N | A | -2.2289 | |
| 3 | Q | A | -3.1558 | |
| 4 | Q | A | -2.1728 | |
| 5 | N | A | -2.0220 | |
| 6 | Y | A | 0.4120 | |
| 37 | V | B | 3.2057 | |
| 38 | L | B | 3.6216 | |
| 39 | Y | B | 3.2838 | |
| 40 | V | B | 2.9339 | |
| 41 | G | B | 0.3549 | |
| 42 | S | B | 0.1458 | |
| 43 | K | B | -2.4005 | |
| 44 | T | B | -2.6402 | |
| 45 | K | B | -2.9398 | |
| 46 | E | B | -2.4979 | |
| 47 | G | B | -1.1930 | |
| 48 | V | B | 0.1652 | |
| 49 | V | B | 1.0409 | |
| 50 | H | B | 0.1461 | |
| 51 | G | B | 0.1931 | |
| 52 | V | B | 1.4870 | |
| 53 | A | B | 1.0482 | |
| 54 | T | B | 1.2360 | |
| 55 | V | B | 1.1498 | |
| 56 | A | B | -0.4357 | |
| 57 | E | B | -2.4045 | |
| 58 | K | B | -3.3626 | |
| 59 | T | B | -2.5277 | |
| 60 | K | B | -3.5307 | |
| 61 | E | B | -3.3347 | |
| 62 | Q | B | -2.0110 | |
| 63 | V | B | 0.0791 | |
| 64 | T | B | -0.1192 | |
| 65 | N | B | -0.2757 | |
| 66 | V | B | 0.7962 | |
| 67 | G | B | 0.0933 | |
| 68 | G | B | 0.3486 | |
| 69 | A | B | 0.8154 | |
| 70 | V | B | 1.7022 | |
| 71 | V | B | 2.0320 | |
| 72 | T | B | 0.8680 | |
| 73 | G | B | 0.5896 | |
| 74 | V | B | 1.8322 | |
| 75 | T | B | 1.1637 | |
| 76 | A | B | 1.2959 | |
| 77 | V | B | 1.7558 | |
| 78 | A | B | 0.3023 | |
| 79 | Q | B | -1.1632 | |
| 80 | K | B | -1.5530 | |
| 81 | T | B | -0.6664 | |
| 82 | V | B | 0.0805 | |
| 83 | E | B | -1.3752 | |
| 84 | G | B | -0.9618 | |
| 85 | A | B | -0.4215 | |
| 86 | G | B | -0.5331 | |
| 87 | S | B | 0.2421 | |
| 88 | I | B | 1.5540 | |
| 89 | A | B | 1.1450 | |
| 90 | A | B | 0.7247 | |
| 91 | A | B | 0.9088 | |
| 92 | T | B | 0.9461 | |
| 93 | G | B | 0.9001 | |
| 94 | F | B | 2.0278 | |
| 95 | V | B | 1.3646 | |
| 96 | K | B | -1.6345 | |
| 97 | K | B | -3.2835 | |
| 98 | D | B | -3.5859 | |
| 99 | Q | B | -2.4318 |