Project name: sup35-asyn (cluster1)

Status: done

Started: 2026-03-24 14:21:25
Settings
Chain sequence(s) A: NNQQNY
B: VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:17)
Show buried residues

Minimal score value
-3.5859
Maximal score value
3.6216
Average score
-0.2164
Total score value
-14.9332

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -2.0626
2 N A -2.2289
3 Q A -3.1558
4 Q A -2.1728
5 N A -2.0220
6 Y A 0.4120
37 V B 3.2057
38 L B 3.6216
39 Y B 3.2838
40 V B 2.9339
41 G B 0.3549
42 S B 0.1458
43 K B -2.4005
44 T B -2.6402
45 K B -2.9398
46 E B -2.4979
47 G B -1.1930
48 V B 0.1652
49 V B 1.0409
50 H B 0.1461
51 G B 0.1931
52 V B 1.4870
53 A B 1.0482
54 T B 1.2360
55 V B 1.1498
56 A B -0.4357
57 E B -2.4045
58 K B -3.3626
59 T B -2.5277
60 K B -3.5307
61 E B -3.3347
62 Q B -2.0110
63 V B 0.0791
64 T B -0.1192
65 N B -0.2757
66 V B 0.7962
67 G B 0.0933
68 G B 0.3486
69 A B 0.8154
70 V B 1.7022
71 V B 2.0320
72 T B 0.8680
73 G B 0.5896
74 V B 1.8322
75 T B 1.1637
76 A B 1.2959
77 V B 1.7558
78 A B 0.3023
79 Q B -1.1632
80 K B -1.5530
81 T B -0.6664
82 V B 0.0805
83 E B -1.3752
84 G B -0.9618
85 A B -0.4215
86 G B -0.5331
87 S B 0.2421
88 I B 1.5540
89 A B 1.1450
90 A B 0.7247
91 A B 0.9088
92 T B 0.9461
93 G B 0.9001
94 F B 2.0278
95 V B 1.3646
96 K B -1.6345
97 K B -3.2835
98 D B -3.5859
99 Q B -2.4318
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Laboratory of Theory of Biopolymers 2018