Project name: query_structure

Status: done

Started: 2026-03-17 00:55:59
Settings
Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALNTSSGQTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAATYGVSWPLVWWLYGYWGQGTQVTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-3.834
Maximal score value
1.8893
Average score
-0.6405
Total score value
-78.7757

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2322
2 V A -0.4670
3 Q A -0.6716
4 L A 0.0000
5 V A 1.0847
6 E A 0.0086
7 S A -0.5349
8 G A -1.2384
9 G A -1.2080
10 G A -0.8716
11 S A -0.5618
12 V A -0.5293
13 Q A -1.3098
14 A A -1.4070
15 G A -1.2881
16 G A -1.0256
17 S A -1.3441
18 L A -1.3399
19 R A -2.2748
20 L A 0.0000
21 S A -0.4115
22 C A 0.0000
23 A A -0.1308
24 A A 0.0000
25 S A -0.5624
26 G A -0.9632
27 S A -0.9676
28 I A 0.0000
29 S A -0.7417
30 S A -0.2731
31 I A 0.0000
32 T A 0.0073
33 Y A 0.0000
34 L A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.4922
39 Q A -2.3289
40 A A -2.1273
41 P A -1.4956
42 G A -2.0354
43 K A -3.4827
44 E A -3.8340
45 R A -3.3093
46 E A -2.0086
47 G A 0.0000
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 L A 0.0000
52 N A -0.8622
53 T A -0.8785
54 S A -0.8088
55 S A -0.9967
56 G A -1.2417
57 Q A -1.5717
58 T A -0.6389
59 Y A -0.4498
60 Y A -0.7968
61 A A 0.0000
62 D A -2.4146
63 S A -1.7686
64 V A 0.0000
65 K A -2.5917
66 G A -1.8532
67 R A -1.6944
68 F A 0.0000
69 T A -0.9947
70 V A 0.0000
71 S A -0.5122
72 L A -0.7494
73 D A -1.6911
74 N A -2.2052
75 A A -1.6792
76 K A -2.4156
77 N A -1.9315
78 T A 0.0000
79 V A 0.0000
80 Y A -0.5919
81 L A 0.0000
82 Q A -1.5783
83 M A 0.0000
84 N A -1.9287
85 S A -1.3758
86 L A 0.0000
87 K A -2.2172
88 P A -1.7430
89 E A -2.2694
90 D A 0.0000
91 T A -1.0426
92 A A 0.0000
93 L A -0.6460
94 Y A 0.0000
95 Y A -0.3637
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 A A 0.0000
100 T A 0.5430
101 Y A 1.1373
102 G A 0.4194
103 V A 0.8669
104 S A 0.3717
105 W A 0.5967
106 P A 0.7710
107 L A 1.6814
108 V A 0.0000
109 W A 1.3582
110 W A 1.8893
111 L A 1.7007
112 Y A 0.0000
113 G A 0.4695
114 Y A 0.3449
115 W A 0.3489
116 G A -0.0047
117 Q A -0.8719
118 G A -0.6087
119 T A 0.0000
120 Q A -1.3090
121 V A 0.0000
122 T A -0.7530
123 V A -0.8564
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Laboratory of Theory of Biopolymers 2018