Project name: seed10

Status: done

Started: 2026-03-03 09:18:16
Settings
Chain sequence(s) A: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
B: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:00)
Show buried residues

Minimal score value
-3.6696
Maximal score value
1.5119
Average score
-0.7183
Total score value
-465.4359

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.2488
2 A A -0.8368
3 S A -0.6985
4 C A -0.2258
5 E A -0.9779
6 Y A 0.5805
7 S A -0.0489
8 A A -0.4615
9 S A -1.3347
10 H A -2.0965
11 K A -2.9456
12 Q A -2.2484
13 D A -1.8402
14 L A 0.0000
15 L A 0.2431
16 L A 0.4601
17 G A 0.0000
18 S A 0.0000
19 T A -0.6115
20 G A 0.0000
21 S A 0.1514
22 I A 0.0000
23 S A -0.0866
24 C A 0.0000
25 P A 0.0000
26 S A -0.0897
27 L A 0.0000
28 S A 0.0050
29 C A 0.2471
30 Q A -0.6430
31 S A -0.9265
32 D A -1.2030
33 A A -0.9415
34 Q A -0.9507
35 S A 0.0000
36 P A -0.7414
37 A A 0.0000
38 V A 0.0000
39 T A 0.0000
40 W A 0.0000
41 Y A 0.0000
42 K A -1.1254
43 N A -1.7829
44 G A -1.2274
45 K A -1.8269
46 L A -0.3982
47 L A 0.4024
48 S A 0.2140
49 V A 0.0000
50 E A -0.7784
51 R A -1.1240
52 S A -0.8288
53 N A 0.0000
54 R A -0.2849
55 I A 0.0000
56 V A 1.1681
57 V A 0.0000
58 D A -1.4733
59 E A -0.9273
60 V A 0.0000
61 Y A 0.2457
62 D A 0.0980
63 Y A 0.6888
64 H A 0.0000
65 Q A -1.4878
66 G A -1.2009
67 T A -1.2900
68 Y A 0.0000
69 V A 0.0000
70 C A 0.0000
71 D A 0.0000
72 Y A 0.0000
73 T A -0.3423
74 Q A -0.9458
75 S A -0.8533
76 D A -1.1034
77 T A 0.0257
78 V A 1.1930
79 S A 0.1969
80 S A -0.2718
81 W A -0.0649
82 T A -0.4839
83 V A -0.1485
84 R A -0.2055
85 A A 0.0000
86 V A -0.2358
87 V A 0.0000
88 Q A -2.0834
89 V A 0.0000
90 R A -2.1141
91 T A -0.4194
92 I A 0.5562
93 V A 0.8303
94 G A -0.7042
95 D A -2.2927
96 T A -2.3174
97 K A -3.3077
98 D A -3.6655
99 K A -3.3189
100 T A -1.8661
101 H A -1.6945
102 T A -0.6167
103 C A 0.2020
104 P A -0.0664
105 P A 0.1639
106 C A 0.7027
107 P A -0.2884
108 A A -0.4842
109 P A -1.0493
110 E A -1.9727
111 A A -1.0502
112 A A -0.6638
113 G A -0.8136
114 G A -0.8163
115 P A 0.0000
116 S A -0.3595
117 V A 0.0000
118 F A 0.4985
119 L A 0.2688
120 F A 0.0643
121 P A -0.1900
122 P A 0.0000
123 K A -0.9486
124 P A -0.6765
125 K A -0.5902
126 D A -0.5383
127 T A 0.0000
128 L A 0.0000
129 M A 0.4678
130 I A 1.5119
131 S A 0.3972
132 R A -0.4556
133 T A -0.1859
134 P A 0.0000
135 E A -0.8265
136 V A 0.0000
137 T A 0.0000
138 C A 0.0000
139 V A 0.0000
140 V A 0.0000
141 V A 0.0000
142 D A -1.1029
143 V A 0.0000
144 S A -2.1400
145 H A -2.6133
146 E A -2.9874
147 D A -2.6242
148 P A -2.7000
149 E A -3.1950
150 V A -2.0400
151 K A -2.2339
152 F A -1.1004
153 N A -1.0021
154 W A 0.0000
155 Y A -0.6343
156 V A -0.9206
157 D A -2.1317
158 G A -0.9091
159 V A 0.5437
160 E A -0.7120
161 V A -0.5547
162 H A -1.8957
163 N A -2.1895
164 A A -1.7962
165 K A -2.2199
166 T A -1.5734
167 K A -1.1873
168 P A -1.5750
169 R A -2.6748
170 E A 0.0000
171 E A -2.3796
172 Q A 0.0000
173 Y A 0.0625
174 N A -0.8113
175 S A -0.8923
176 T A -1.4643
177 Y A 0.0000
178 R A 0.0000
179 V A 0.0000
180 V A 0.0000
181 S A 0.0000
182 V A 0.0000
183 L A 0.0000
184 T A -0.5965
185 V A 0.0000
186 L A 0.9281
187 H A 0.0152
188 Q A -1.0614
189 D A -1.0611
190 W A 0.0000
191 L A -0.9601
192 N A -1.8649
193 G A -1.7412
194 K A -2.0970
195 E A -2.2206
196 Y A 0.0000
197 K A -1.2338
198 C A 0.0000
199 K A -0.9663
200 V A 0.0000
201 S A -1.3852
202 N A 0.0000
203 K A -2.5743
204 A A -1.4840
205 L A -0.9299
206 G A -0.7163
207 A A -0.4448
208 P A -0.7691
209 I A -0.5545
210 E A -0.8049
211 K A -0.6423
212 T A -0.7921
213 I A 0.0000
214 S A 0.0000
215 K A 0.0000
216 A A -0.8451
217 K A -0.4226
218 G A -0.8949
219 Q A -2.1007
220 P A -1.7316
221 R A -2.3832
222 E A -2.7669
223 P A 0.0000
224 Q A -1.2873
225 V A 0.0000
226 Y A 0.0000
227 T A -0.7715
228 L A 0.0000
229 P A -0.4033
230 P A -0.8764
231 S A 0.0000
232 R A -2.6706
233 D A -2.7876
234 E A 0.0000
235 L A -1.7857
236 T A -1.5172
237 K A -2.0322
238 N A -2.3902
239 Q A -2.1999
240 V A 0.0000
241 S A 0.0000
242 L A 0.0000
243 T A 0.0000
244 C A 0.0000
245 L A 0.0000
246 V A 0.0000
247 K A -0.7399
248 G A -1.3187
249 F A 0.0000
250 Y A 0.0000
251 P A 0.0000
252 S A -0.8166
253 D A -0.9569
254 I A 0.0000
255 A A -0.4348
256 V A 0.0000
257 E A -1.0617
258 W A 0.0000
259 E A -1.6810
260 S A 0.0000
261 N A -1.8280
262 G A -1.7359
263 Q A -2.2532
264 P A -1.8780
265 E A 0.0000
266 N A -1.9926
267 N A -1.5480
268 Y A -1.1108
269 K A -1.0750
270 T A -0.4359
271 T A 0.0000
272 P A -0.2449
273 P A -0.2434
274 V A -0.1011
275 L A -0.2191
276 D A -1.1431
277 S A -1.4482
278 D A -2.1238
279 G A -1.3019
280 S A 0.0000
281 F A 0.0000
282 F A 0.0000
283 L A 0.0000
284 Y A 0.0000
285 S A 0.0000
286 K A 0.0000
287 L A 0.0000
288 T A -0.9234
289 V A 0.0000
290 D A -2.4019
291 K A -2.4731
292 S A -2.1852
293 R A -1.9521
294 W A 0.0000
295 Q A -2.3426
296 Q A -2.1204
297 G A -1.1800
298 N A -0.8094
299 V A 0.2705
300 F A 0.0000
301 S A 0.0000
302 C A 0.0000
303 S A 0.0000
304 V A 0.0000
305 M A 0.0000
306 H A 0.0000
307 E A -1.1448
308 A A -1.6085
309 L A -1.4407
310 H A -1.7419
311 N A -1.4185
312 H A -0.9007
313 Y A -0.3592
314 T A -0.6026
315 Q A -0.8831
316 K A -0.9305
317 S A -0.4185
318 L A 0.0000
319 S A -0.1113
320 L A -0.3487
321 S A -0.6049
322 P A -1.2333
323 G A -1.4261
324 K A -2.0333
1 N B -1.2331
2 A B -0.8007
3 S B -0.6565
4 C B -0.1660
5 E B -0.9482
6 Y B 0.5793
7 S B -0.1026
8 A B -0.5022
9 S B -1.3719
10 H B -2.1383
11 K B -2.9911
12 Q B -2.2992
13 D B -1.8916
14 L B 0.0000
15 L B 0.2537
16 L B 0.3932
17 G B 0.0000
18 S B 0.0000
19 T B -0.6053
20 G B 0.0000
21 S B 0.1214
22 I B 0.0000
23 S B -0.1723
24 C B 0.0000
25 P B 0.0000
26 S B -0.1659
27 L B 0.0000
28 S B -0.0836
29 C B 0.1414
30 Q B -0.5921
31 S B -0.8060
32 D B -1.0199
33 A B -0.7980
34 Q B -0.7715
35 S B 0.0000
36 P B -0.5642
37 A B 0.0000
38 V B 0.0000
39 T B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 K B -1.1354
43 N B -1.7848
44 G B -1.2096
45 K B -1.7199
46 L B -0.1811
47 L B 0.5013
48 S B 0.2211
49 V B 0.0000
50 E B -0.6117
51 R B -0.8107
52 S B -0.6799
53 N B 0.0000
54 R B -0.3658
55 I B 0.0000
56 V B 1.1151
57 V B 0.0000
58 D B -1.5603
59 E B -1.1076
60 V B 0.0000
61 Y B 0.1022
62 D B -0.0267
63 Y B 0.4673
64 H B -0.4789
65 Q B -1.7135
66 G B -1.3262
67 T B -1.3496
68 Y B 0.0000
69 V B 0.0000
70 C B 0.0000
71 D B 0.0000
72 Y B 0.0000
73 T B 0.0000
74 Q B -0.9719
75 S B -0.9558
76 D B -1.3331
77 T B -0.0887
78 V B 1.1114
79 S B 0.0854
80 S B -0.3281
81 W B -0.1279
82 T B -0.5535
83 V B -0.2215
84 R B -0.5210
85 A B 0.0000
86 V B -0.2794
87 V B 0.0000
88 Q B -2.1611
89 V B 0.0000
90 R B -2.2933
91 T B -0.5276
92 I B 0.5560
93 V B 0.7357
94 G B -0.6901
95 D B -2.2937
96 T B -2.3925
97 K B -3.2822
98 D B -3.6696
99 K B -3.3065
100 T B -1.8889
101 H B -1.7072
102 T B -0.7025
103 C B 0.1532
104 P B -0.0959
105 P B 0.1421
106 C B 0.5603
107 P B -0.3528
108 A B -0.4695
109 P B -1.0378
110 E B -1.9406
111 A B -1.0345
112 A B -0.6536
113 G B -0.8344
114 G B -1.0169
115 P B 0.0000
116 S B -0.4352
117 V B 0.0000
118 F B 0.4441
119 L B 0.3194
120 F B 0.0055
121 P B -0.2444
122 P B 0.0000
123 K B -1.1141
124 P B 0.0000
125 K B -0.4827
126 D B 0.0000
127 T B 0.0000
128 L B 0.0000
129 M B 0.4700
130 I B 1.4599
131 S B 0.2594
132 R B -0.7377
133 T B -0.3071
134 P B 0.0000
135 E B -0.7935
136 V B 0.0000
137 T B -0.1565
138 C B 0.0000
139 V B 0.0000
140 V B 0.0000
141 V B 0.0000
142 D B -1.2951
143 V B 0.0000
144 S B -2.1308
145 H B -2.5916
146 E B -2.9634
147 D B -2.5663
148 P B -2.6529
149 E B -3.1526
150 V B -2.0124
151 K B -2.2467
152 F B -1.1024
153 N B -0.9941
154 W B 0.0000
155 Y B -0.5818
156 V B -0.8728
157 D B -2.0858
158 G B -0.8703
159 V B 0.5873
160 E B -0.6453
161 V B -0.5278
162 H B -1.8831
163 N B -2.1648
164 A B -1.7549
165 K B -2.1979
166 T B -1.5799
167 K B -1.2259
168 P B -1.5633
169 R B -2.5561
170 E B 0.0000
171 E B -2.2294
172 Q B 0.0000
173 Y B 0.1392
174 N B -0.8160
175 S B -0.8627
176 T B -1.4599
177 Y B -1.6461
178 R B 0.0000
179 V B 0.0000
180 V B 0.0000
181 S B 0.0000
182 V B -0.7824
183 L B 0.0000
184 T B -0.5423
185 V B 0.0000
186 L B 0.9213
187 H B 0.0020
188 Q B -1.0811
189 D B -1.0844
190 W B 0.0000
191 L B -0.9838
192 N B -1.8708
193 G B -1.7275
194 K B -2.0833
195 E B -2.1136
196 Y B 0.0000
197 K B -1.1740
198 C B 0.0000
199 K B -1.0316
200 V B 0.0000
201 S B -1.4389
202 N B 0.0000
203 K B -2.5893
204 A B -1.4771
205 L B -0.9474
206 G B -0.7350
207 A B -0.6687
208 P B -0.9013
209 I B -0.6652
210 E B -0.8389
211 K B -0.6203
212 T B -0.8094
213 I B 0.0000
214 S B -1.0588
215 K B 0.0000
216 A B -0.6372
217 K B -0.3099
218 G B -0.7428
219 Q B -1.8464
220 P B -1.5861
221 R B -2.0848
222 E B -2.6551
223 P B 0.0000
224 Q B -1.2318
225 V B 0.0000
226 Y B 0.0000
227 T B -0.7578
228 L B 0.0000
229 P B -0.4050
230 P B -0.8671
231 S B -1.5284
232 R B -2.6548
233 D B -2.7994
234 E B 0.0000
235 L B -1.7476
236 T B -1.5515
237 K B -2.1326
238 N B -2.3915
239 Q B -2.1345
240 V B 0.0000
241 S B 0.0000
242 L B 0.0000
243 T B 0.0000
244 C B 0.0000
245 L B 0.0000
246 V B 0.0000
247 K B -0.7413
248 G B -1.2526
249 F B 0.0000
250 Y B 0.0000
251 P B 0.0000
252 S B -0.7539
253 D B -0.8643
254 I B 0.0000
255 A B 0.0000
256 V B 0.0000
257 E B -1.0060
258 W B 0.0000
259 E B -1.7156
260 S B 0.0000
261 N B -1.8996
262 G B -1.7661
263 Q B -2.2517
264 P B -1.8585
265 E B 0.0000
266 N B -1.9915
267 N B -1.4695
268 Y B -1.0483
269 K B -1.0424
270 T B -0.4209
271 T B 0.0000
272 P B -0.2322
273 P B -0.2153
274 V B -0.0545
275 L B -0.1361
276 D B -1.0834
277 S B -1.4019
278 D B -2.0483
279 G B -1.1073
280 S B 0.0000
281 F B 0.0000
282 F B 0.0000
283 L B 0.0000
284 Y B 0.0000
285 S B 0.0000
286 K B 0.0000
287 L B 0.0000
288 T B -0.8528
289 V B 0.0000
290 D B -2.2243
291 K B -2.3809
292 S B -2.1217
293 R B -1.9397
294 W B 0.0000
295 Q B -2.2932
296 Q B -2.1500
297 G B -1.3179
298 N B -1.0115
299 V B -0.0708
300 F B 0.0000
301 S B 0.0000
302 C B 0.0000
303 S B 0.0000
304 V B 0.0000
305 M B 0.0000
306 H B 0.0000
307 E B -1.1190
308 A B -1.5979
309 L B 0.0000
310 H B -1.8426
311 N B -1.4880
312 H B -0.9855
313 Y B -0.5154
314 T B -0.7027
315 Q B -0.9438
316 K B -0.8980
317 S B -0.4808
318 L B 0.0000
319 S B -0.2535
320 L B -0.3944
321 S B -0.6408
322 P B -1.1168
323 G B -1.4220
324 K B -2.0348
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Laboratory of Theory of Biopolymers 2018