Project name: 22.07selen

Status: done

Started: 2025-07-22 20:30:42
Settings
Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASASSPSAKMLRWGWFRQAPGQGLEAVAQSEDEAKKIGIPNAKDPRFTISRDNSKNTLYLQMNSLRAEDTAVYYCADATLLDTEEQLAERGDWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:08)
Show buried residues

Minimal score value
-3.9711
Maximal score value
1.6511
Average score
-0.9398
Total score value
-118.4141

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4594
2 V A -0.8484
3 Q A -1.3096
4 L A 0.0000
5 V A 0.6310
6 E A 0.0000
7 S A -0.2744
8 G A -0.6374
9 G A 0.1689
10 G A 0.8892
11 L A 1.4041
12 V A -0.0713
13 Q A -1.4208
14 P A -1.7746
15 G A -1.5032
16 G A -1.0351
17 S A -1.2899
18 L A -0.9179
19 R A -2.0752
20 L A 0.0000
21 S A -0.5112
22 C A 0.0000
23 A A -0.2838
24 A A 0.0000
25 S A -0.6239
26 A A -0.5298
27 S A -0.6007
28 S A -0.7772
29 P A -0.6410
30 S A -0.9723
31 A A -0.8523
32 K A -1.6269
33 M A -0.8331
34 L A -0.1586
35 R A -0.5428
36 W A 0.0000
37 G A 0.0000
38 W A 0.0000
39 F A 0.0000
40 R A -0.5401
41 Q A -0.9279
42 A A -1.1289
43 P A -1.0054
44 G A -1.3530
45 Q A -1.9346
46 G A -1.3506
47 L A -0.7469
48 E A -1.4167
49 A A -0.8631
50 V A 0.0000
51 A A 0.0000
52 Q A 0.0000
53 S A -1.7878
54 E A -3.6022
55 D A -3.5370
56 E A 0.0000
57 A A 0.0000
58 K A -3.9432
59 K A -3.7992
60 I A 0.0000
61 G A -2.3637
62 I A 0.0000
63 P A -1.3975
64 N A -1.8570
65 A A -1.5440
66 K A -2.3236
67 D A -1.5249
68 P A -1.1567
69 R A -1.0452
70 F A 0.0000
71 T A -0.6862
72 I A -0.2416
73 S A -0.9073
74 R A -2.2092
75 D A -2.5896
76 N A -2.8968
77 S A -2.1018
78 K A -2.7215
79 N A -2.0657
80 T A 0.0000
81 L A 0.0000
82 Y A -0.8623
83 L A 0.0000
84 Q A -1.1464
85 M A 0.0000
86 N A -1.4300
87 S A -1.3058
88 L A 0.0000
89 R A -2.6493
90 A A -1.8901
91 E A -2.3510
92 D A 0.0000
93 T A -0.4658
94 A A 0.0000
95 V A 0.8630
96 Y A 0.0000
97 Y A 0.3106
98 C A 0.0000
99 A A 0.0000
100 D A -0.3490
101 A A 0.0000
102 T A 0.1558
103 L A 0.6510
104 L A 0.0000
105 D A -2.8971
106 T A -2.9131
107 E A -3.6863
108 E A -3.9711
109 Q A -3.4192
110 L A 0.0000
111 A A -2.5383
112 E A -3.6626
113 R A -3.2339
114 G A -1.9287
115 D A -1.2820
116 W A -0.6810
117 G A -0.4073
118 Q A -0.7658
119 G A 0.0000
120 T A 0.6540
121 L A 1.6511
122 V A 0.0000
123 T A 0.3722
124 V A 0.0000
125 S A -0.7068
126 S A -0.4824
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Laboratory of Theory of Biopolymers 2018