| Chain sequence(s) |
A: VSHWMY
C: VSHWMY B: VSHWMY E: VSHWMY D: VSHWMY G: VSHWMY F: VSHWMY I: VSHWMY H: VSHWMY J: VSHWMY input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,J |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:22)
[INFO] Main: Simulation completed successfully. (00:00:27)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | E | 2.0580 | |
| 2 | S | E | 1.1509 | |
| 3 | H | E | 0.4649 | |
| 4 | W | E | 0.0000 | |
| 5 | M | E | 1.0364 | |
| 6 | Y | E | 1.3608 | |
| 1 | V | G | 1.5546 | |
| 2 | S | G | 0.9654 | |
| 3 | H | G | 0.5473 | |
| 4 | W | G | 0.9673 | |
| 5 | M | G | 1.5471 | |
| 6 | Y | G | 2.2983 | |
| 1 | V | B | 1.5570 | |
| 2 | S | B | 0.5613 | |
| 3 | H | B | 0.5851 | |
| 4 | W | B | 1.2868 | |
| 5 | M | B | 1.9376 | |
| 6 | Y | B | 2.3975 | |
| 1 | V | D | 2.5146 | |
| 2 | S | D | 1.5486 | |
| 3 | H | D | 0.8687 | |
| 4 | W | D | 0.0000 | |
| 5 | M | D | 1.0398 | |
| 6 | Y | D | 1.3638 | |
| 1 | V | A | 2.2081 | |
| 2 | S | A | 0.9241 | |
| 3 | H | A | 0.0689 | |
| 4 | W | A | 0.8374 | |
| 5 | M | A | 1.5438 | |
| 6 | Y | A | 2.0066 | |
| 1 | V | C | 1.5194 | |
| 2 | S | C | 0.7867 | |
| 3 | H | C | 0.5411 | |
| 4 | W | C | 1.0087 | |
| 5 | M | C | 1.7241 | |
| 6 | Y | C | 2.4089 | |
| 1 | V | F | 1.4001 | |
| 2 | S | F | 0.6060 | |
| 3 | H | F | 0.3823 | |
| 4 | W | F | 1.0541 | |
| 5 | M | F | 1.7979 | |
| 6 | Y | F | 2.4096 | |
| 1 | V | H | 2.1116 | |
| 2 | S | H | 1.4506 | |
| 3 | H | H | 0.8804 | |
| 4 | W | H | 0.0000 | |
| 5 | M | H | 1.2583 | |
| 6 | Y | H | 1.6569 | |
| 1 | V | J | 2.2963 | |
| 2 | S | J | 0.9305 | |
| 3 | H | J | 0.8118 | |
| 4 | W | J | 1.5079 | |
| 5 | M | J | 2.2791 | |
| 6 | Y | J | 2.2693 | |
| 1 | V | I | 2.1764 | |
| 2 | S | I | 0.8557 | |
| 3 | H | I | 0.1431 | |
| 4 | W | I | 1.1714 | |
| 5 | M | I | 2.0860 | |
| 6 | Y | I | 2.3005 |