Project name: 5A1

Status: done

Started: 2025-06-25 13:56:34
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Chain sequence(s) H: QVQLQESGGGSVQAGGSLKLSCTASGYTNRLKCMGWFRQAPGKEREEIATISTGTGNTYYADSVKGRFTFSQDKVKNTVYLQMNTLKPDDTGMYYCAADVRPDGTTCHYNSGGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:28)
Show buried residues

Minimal score value
-3.2243
Maximal score value
0.6377
Average score
-0.912
Total score value
-111.2658

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2677
2 V H -0.7851
3 Q H -1.8403
4 L H 0.0000
5 Q H -1.8520
6 E H 0.0000
7 S H -1.0021
8 G H -0.9816
9 G H -0.9473
11 G H -0.7330
12 S H -0.5930
13 V H -0.7423
14 Q H -1.6333
15 A H -1.6591
16 G H -1.3095
17 G H -1.0347
18 S H -1.0174
19 L H -0.7058
20 K H -1.3687
21 L H 0.0000
22 S H -0.6291
23 C H 0.0000
24 T H -1.1205
25 A H 0.0000
26 S H -1.0500
27 G H -0.8149
28 Y H -0.4695
29 T H -0.9237
30 N H -1.8717
35 R H -2.1764
36 L H -0.9285
37 K H -1.5163
38 C H 0.0000
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H -0.4195
43 R H 0.0000
44 Q H -1.6729
45 A H -1.6360
46 P H -1.1263
47 G H -1.7395
48 K H -2.7914
49 E H -3.2243
50 R H -2.4420
51 E H -1.7291
52 E H -1.1559
53 I H 0.0000
54 A H 0.0000
55 T H 0.2185
56 I H 0.0000
57 S H -1.0552
58 T H -1.4867
59 G H -1.4260
62 T H -1.1161
63 G H -1.3916
64 N H -1.2734
65 T H -0.0912
66 Y H 0.6377
67 Y H -0.4599
68 A H -1.2293
69 D H -2.4273
70 S H -1.7890
71 V H 0.0000
72 K H -2.4629
74 G H -1.7573
75 R H -1.6475
76 F H 0.0000
77 T H -0.6203
78 F H 0.0000
79 S H -0.6764
80 Q H -0.9549
81 D H -1.2661
82 K H -1.6915
83 V H -0.1295
84 K H -1.5616
85 N H -1.0959
86 T H 0.0000
87 V H 0.0000
88 Y H -0.2961
89 L H 0.0000
90 Q H -0.9835
91 M H 0.0000
92 N H -1.1664
93 T H -1.0885
94 L H 0.0000
95 K H -2.5198
96 P H -1.9721
97 D H -2.3650
98 D H 0.0000
99 T H -1.0828
100 G H 0.0000
101 M H -0.3738
102 Y H 0.0000
103 Y H -0.4754
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 D H 0.0000
108 V H -0.0855
109 R H -1.2265
110 P H -1.6222
111 D H -2.2181
111A G H -1.5070
112A T H -1.1423
112 T H -0.9222
113 C H -1.0763
114 H H -1.3318
115 Y H 0.0000
116 N H -1.5040
117 S H -1.1858
118 G H -1.4527
119 G H -1.4051
120 Q H -1.6728
121 G H 0.0000
122 T H -0.9012
123 Q H -0.9903
124 V H 0.0000
125 T H -0.9127
126 V H 0.0000
127 S H -1.2107
128 S H -0.9114
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Laboratory of Theory of Biopolymers 2018