| Chain sequence(s) |
H: EVQLVESGGGEVQPGGSLKLSCVASGTDFSINFVRWYRQRPGKQREWVAGFTANGDTNYPDSMKGRFTISRDNAKNTVYLQINSLKSEDTAVYYCYMLDNWGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VK24H,IR36H,VR101H,VR5H |
| Energy difference between WT (input) and mutated protein (by FoldX) | -1.173 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:25)
[INFO] FoldX: Starting FoldX energy minimalization (00:02:37)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:30)
[INFO] Main: Simulation completed successfully. (00:03:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -1.7852 | |
| 2 | V | H | -0.3507 | |
| 3 | Q | H | -1.1637 | |
| 4 | L | H | 0.0000 | |
| 5 | R | H | -1.8441 | mutated: VR5H |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.2793 | |
| 8 | G | H | -0.4544 | |
| 9 | G | H | -0.3619 | |
| 11 | G | H | -0.6540 | |
| 12 | E | H | -1.8368 | |
| 13 | V | H | -0.3376 | |
| 14 | Q | H | -1.1833 | |
| 15 | P | H | -0.6306 | |
| 16 | G | H | -0.5383 | |
| 17 | G | H | -0.3072 | |
| 18 | S | H | -0.2618 | |
| 19 | L | H | 0.0503 | |
| 20 | K | H | -1.3380 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | 0.0167 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.0702 | mutated: VK24H |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.2377 | |
| 27 | G | H | -0.4974 | |
| 28 | T | H | -0.4186 | |
| 29 | D | H | -1.7928 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.4671 | |
| 36 | R | H | -1.6870 | mutated: IR36H |
| 37 | N | H | -1.4632 | |
| 38 | F | H | 0.1895 | |
| 39 | V | H | 0.0000 | |
| 40 | R | H | -0.2057 | |
| 41 | W | H | 0.0000 | |
| 42 | Y | H | 0.2295 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.5952 | |
| 45 | R | H | -0.5825 | |
| 46 | P | H | -0.4204 | |
| 47 | G | H | -0.8110 | |
| 48 | K | H | -1.9995 | |
| 49 | Q | H | -1.6267 | |
| 50 | R | H | -0.9954 | |
| 51 | E | H | -0.3427 | |
| 52 | W | H | 0.2997 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | G | H | 0.0000 | |
| 56 | F | H | 0.2190 | |
| 57 | T | H | 0.0914 | |
| 58 | A | H | -0.3360 | |
| 59 | N | H | -1.3143 | |
| 63 | G | H | -0.8088 | |
| 64 | D | H | -1.8420 | |
| 65 | T | H | -0.4612 | |
| 66 | N | H | -0.7405 | |
| 67 | Y | H | 0.0570 | |
| 68 | P | H | -0.3598 | |
| 69 | D | H | -2.0216 | |
| 70 | S | H | -0.5291 | |
| 71 | M | H | 0.0000 | |
| 72 | K | H | -1.9120 | |
| 74 | G | H | -0.8394 | |
| 75 | R | H | -0.6086 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.0258 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.1630 | |
| 80 | R | H | -0.2946 | |
| 81 | D | H | -0.6738 | |
| 82 | N | H | -1.3626 | |
| 83 | A | H | -0.4684 | |
| 84 | K | H | -1.7254 | |
| 85 | N | H | -0.6716 | |
| 86 | T | H | -0.2289 | |
| 87 | V | H | 0.0000 | |
| 88 | Y | H | 0.3874 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.6966 | |
| 91 | I | H | 0.0000 | |
| 92 | N | H | -0.6658 | |
| 93 | S | H | -0.3350 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -1.5529 | |
| 96 | S | H | -0.6613 | |
| 97 | E | H | -1.8318 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.0133 | |
| 100 | A | H | 0.0000 | |
| 101 | R | H | -1.6041 | mutated: VR101H |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | Y | H | 0.1989 | |
| 106 | M | H | 0.0000 | |
| 107 | L | H | 0.6504 | |
| 116 | D | H | -1.6849 | |
| 117 | N | H | -0.6343 | |
| 118 | W | H | 0.3131 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2113 | |
| 121 | G | H | -0.2888 | |
| 122 | T | H | -0.1619 | |
| 123 | Q | H | -1.0180 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.2433 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.1290 | |
| 128 | S | H | -0.2295 |