Project name: ca5cca6dd3cc146

Status: done

Started: 2026-05-21 08:47:38
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Chain sequence(s) A: GGKGHGF
C: GGKGHGF
B: GGKGHGF
E: GGKGHGF
D: GGKGHGF
G: GGKGHGF
F: GGKGHGF
I: GGKGHGF
H: GGKGHGF
K: GGKGHGF
J: GGKGHGF
M: GGKGHGF
L: GGKGHGF
O: GGKGHGF
N: GGKGHGF
Q: GGKGHGF
P: GGKGHGF
S: GGKGHGF
R: GGKGHGF
T: GGKGHGF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:14)
Show buried residues

Minimal score value
-4.387
Maximal score value
1.7715
Average score
-1.29
Total score value
-180.6049

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.4033
2 G A -2.2183
3 K A -2.8789
4 G A -2.1395
5 H A -1.4534
6 G A -0.0277
7 F A 1.5521
1 G B -1.2353
2 G B -0.9717
3 K B -1.3555
4 G B 0.0000
5 H B 0.5750
6 G B 1.5406
7 F B 1.7109
1 G C 0.0000
2 G C 0.0000
3 K C -3.5707
4 G C 0.0000
5 H C -0.1084
6 G C 1.0323
7 F C 1.4330
1 G D -1.1322
2 G D -1.6712
3 K D -2.8088
4 G D -1.4292
5 H D -1.6797
6 G D -0.2925
7 F D 1.5813
1 G E -1.9365
2 G E -2.8288
3 K E -4.3827
4 G E -3.4920
5 H E -3.4966
6 G E -1.2625
7 F E 0.0136
1 G F -1.7113
2 G F -3.0684
3 K F -4.3870
4 G F 0.0000
5 H F -2.6651
6 G F 0.0000
7 F F 0.8520
1 G G -1.6249
2 G G -2.1934
3 K G -2.7135
4 G G -1.7354
5 H G -1.4235
6 G G 0.4434
7 F G 0.5701
1 G H -1.7336
2 G H -2.6659
3 K H -3.4846
4 G H -2.5619
5 H H -1.2471
6 G H -0.0541
7 F H 1.7260
1 G I -1.4554
2 G I -2.3540
3 K I -3.2575
4 G I -2.2286
5 H I -1.7709
6 G I 0.0000
7 F I 1.0944
1 G J -1.6568
2 G J -2.2837
3 K J -2.8368
4 G J 0.0000
5 H J -1.2119
6 G J 0.0000
7 F J 1.3360
1 G K -1.5468
2 G K -2.4644
3 K K -2.7950
4 G K -2.2704
5 H K -1.5708
6 G K 0.0000
7 F K 1.1210
1 G L -1.2723
2 G L -1.8520
3 K L -3.0254
4 G L -1.9872
5 H L -1.7369
6 G L -0.2931
7 F L 1.7715
1 G M -1.4887
2 G M -2.1360
3 K M -2.7879
4 G M -1.9638
5 H M -1.3051
6 G M -0.0956
7 F M 1.0525
1 G N -1.5258
2 G N -2.3057
3 K N -3.2511
4 G N -2.7213
5 H N -1.9403
6 G N -0.6970
7 F N 0.7243
1 G O -1.6537
2 G O -2.3502
3 K O -3.4982
4 G O 0.0000
5 H O -1.9011
6 G O 0.0000
7 F O 0.8416
1 G P -2.0364
2 G P 0.0000
3 K P -3.7887
4 G P 0.0000
5 H P -2.1545
6 G P 0.0000
7 F P 0.6609
1 G Q -2.3459
2 G Q -3.3638
3 K Q -3.4306
4 G Q -2.9332
5 H Q -2.1490
6 G Q -0.6744
7 F Q 0.0000
1 G R -2.0227
2 G R -2.7282
3 K R -3.7183
4 G R -3.1408
5 H R -2.0798
6 G R 0.0000
7 F R 0.9601
1 G S -2.3323
2 G S -2.8578
3 K S -3.1642
4 G S -2.0712
5 H S -0.7786
6 G S 0.0000
7 F S 0.0000
1 G T -1.1820
2 G T -1.8357
3 K T -2.6057
4 G T -1.8407
5 H T -1.2944
6 G T 0.3510
7 F T 1.5169
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Laboratory of Theory of Biopolymers 2018