| Chain sequence(s) |
A: GGKGHGF
C: GGKGHGF B: GGKGHGF E: GGKGHGF D: GGKGHGF G: GGKGHGF F: GGKGHGF I: GGKGHGF H: GGKGHGF K: GGKGHGF J: GGKGHGF M: GGKGHGF L: GGKGHGF O: GGKGHGF N: GGKGHGF Q: GGKGHGF P: GGKGHGF S: GGKGHGF R: GGKGHGF T: GGKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:10)
[INFO] Main: Simulation completed successfully. (00:04:14)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.4033 | |
| 2 | G | A | -2.2183 | |
| 3 | K | A | -2.8789 | |
| 4 | G | A | -2.1395 | |
| 5 | H | A | -1.4534 | |
| 6 | G | A | -0.0277 | |
| 7 | F | A | 1.5521 | |
| 1 | G | B | -1.2353 | |
| 2 | G | B | -0.9717 | |
| 3 | K | B | -1.3555 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | 0.5750 | |
| 6 | G | B | 1.5406 | |
| 7 | F | B | 1.7109 | |
| 1 | G | C | 0.0000 | |
| 2 | G | C | 0.0000 | |
| 3 | K | C | -3.5707 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -0.1084 | |
| 6 | G | C | 1.0323 | |
| 7 | F | C | 1.4330 | |
| 1 | G | D | -1.1322 | |
| 2 | G | D | -1.6712 | |
| 3 | K | D | -2.8088 | |
| 4 | G | D | -1.4292 | |
| 5 | H | D | -1.6797 | |
| 6 | G | D | -0.2925 | |
| 7 | F | D | 1.5813 | |
| 1 | G | E | -1.9365 | |
| 2 | G | E | -2.8288 | |
| 3 | K | E | -4.3827 | |
| 4 | G | E | -3.4920 | |
| 5 | H | E | -3.4966 | |
| 6 | G | E | -1.2625 | |
| 7 | F | E | 0.0136 | |
| 1 | G | F | -1.7113 | |
| 2 | G | F | -3.0684 | |
| 3 | K | F | -4.3870 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -2.6651 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 0.8520 | |
| 1 | G | G | -1.6249 | |
| 2 | G | G | -2.1934 | |
| 3 | K | G | -2.7135 | |
| 4 | G | G | -1.7354 | |
| 5 | H | G | -1.4235 | |
| 6 | G | G | 0.4434 | |
| 7 | F | G | 0.5701 | |
| 1 | G | H | -1.7336 | |
| 2 | G | H | -2.6659 | |
| 3 | K | H | -3.4846 | |
| 4 | G | H | -2.5619 | |
| 5 | H | H | -1.2471 | |
| 6 | G | H | -0.0541 | |
| 7 | F | H | 1.7260 | |
| 1 | G | I | -1.4554 | |
| 2 | G | I | -2.3540 | |
| 3 | K | I | -3.2575 | |
| 4 | G | I | -2.2286 | |
| 5 | H | I | -1.7709 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 1.0944 | |
| 1 | G | J | -1.6568 | |
| 2 | G | J | -2.2837 | |
| 3 | K | J | -2.8368 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -1.2119 | |
| 6 | G | J | 0.0000 | |
| 7 | F | J | 1.3360 | |
| 1 | G | K | -1.5468 | |
| 2 | G | K | -2.4644 | |
| 3 | K | K | -2.7950 | |
| 4 | G | K | -2.2704 | |
| 5 | H | K | -1.5708 | |
| 6 | G | K | 0.0000 | |
| 7 | F | K | 1.1210 | |
| 1 | G | L | -1.2723 | |
| 2 | G | L | -1.8520 | |
| 3 | K | L | -3.0254 | |
| 4 | G | L | -1.9872 | |
| 5 | H | L | -1.7369 | |
| 6 | G | L | -0.2931 | |
| 7 | F | L | 1.7715 | |
| 1 | G | M | -1.4887 | |
| 2 | G | M | -2.1360 | |
| 3 | K | M | -2.7879 | |
| 4 | G | M | -1.9638 | |
| 5 | H | M | -1.3051 | |
| 6 | G | M | -0.0956 | |
| 7 | F | M | 1.0525 | |
| 1 | G | N | -1.5258 | |
| 2 | G | N | -2.3057 | |
| 3 | K | N | -3.2511 | |
| 4 | G | N | -2.7213 | |
| 5 | H | N | -1.9403 | |
| 6 | G | N | -0.6970 | |
| 7 | F | N | 0.7243 | |
| 1 | G | O | -1.6537 | |
| 2 | G | O | -2.3502 | |
| 3 | K | O | -3.4982 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -1.9011 | |
| 6 | G | O | 0.0000 | |
| 7 | F | O | 0.8416 | |
| 1 | G | P | -2.0364 | |
| 2 | G | P | 0.0000 | |
| 3 | K | P | -3.7887 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | -2.1545 | |
| 6 | G | P | 0.0000 | |
| 7 | F | P | 0.6609 | |
| 1 | G | Q | -2.3459 | |
| 2 | G | Q | -3.3638 | |
| 3 | K | Q | -3.4306 | |
| 4 | G | Q | -2.9332 | |
| 5 | H | Q | -2.1490 | |
| 6 | G | Q | -0.6744 | |
| 7 | F | Q | 0.0000 | |
| 1 | G | R | -2.0227 | |
| 2 | G | R | -2.7282 | |
| 3 | K | R | -3.7183 | |
| 4 | G | R | -3.1408 | |
| 5 | H | R | -2.0798 | |
| 6 | G | R | 0.0000 | |
| 7 | F | R | 0.9601 | |
| 1 | G | S | -2.3323 | |
| 2 | G | S | -2.8578 | |
| 3 | K | S | -3.1642 | |
| 4 | G | S | -2.0712 | |
| 5 | H | S | -0.7786 | |
| 6 | G | S | 0.0000 | |
| 7 | F | S | 0.0000 | |
| 1 | G | T | -1.1820 | |
| 2 | G | T | -1.8357 | |
| 3 | K | T | -2.6057 | |
| 4 | G | T | -1.8407 | |
| 5 | H | T | -1.2944 | |
| 6 | G | T | 0.3510 | |
| 7 | F | T | 1.5169 |