| Chain sequence(s) |
A: GKGHKGHG
C: GKGHKGHG B: GKGHKGHG E: GKGHKGHG D: GKGHKGHG G: GKGHKGHG F: GKGHKGHG I: GKGHKGHG H: GKGHKGHG K: GKGHKGHG J: GKGHKGHG M: GKGHKGHG L: GKGHKGHG O: GKGHKGHG N: GKGHKGHG Q: GKGHKGHG P: GKGHKGHG S: GKGHKGHG R: GKGHKGHG T: GKGHKGHG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:12:25)
[INFO] Main: Simulation completed successfully. (00:12:30)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.4020 | |
| 2 | K | A | -1.7146 | |
| 3 | G | A | -1.6565 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -2.3319 | |
| 6 | G | A | 0.0000 | |
| 7 | H | A | -1.4598 | |
| 8 | G | A | -1.0865 | |
| 1 | G | B | -1.3776 | |
| 2 | K | B | -1.6735 | |
| 3 | G | B | -1.5810 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -2.1874 | |
| 6 | G | B | 0.0000 | |
| 7 | H | B | -1.3487 | |
| 8 | G | B | -1.1584 | |
| 1 | G | C | -1.3689 | |
| 2 | K | C | -1.7238 | |
| 3 | G | C | -1.6506 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -2.1821 | |
| 6 | G | C | 0.0000 | |
| 7 | H | C | -1.6121 | |
| 8 | G | C | -1.2845 | |
| 1 | G | D | -1.4800 | |
| 2 | K | D | -2.0216 | |
| 3 | G | D | -1.7990 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -2.3993 | |
| 6 | G | D | 0.0000 | |
| 7 | H | D | -1.6841 | |
| 8 | G | D | -1.7010 | |
| 1 | G | E | -1.7958 | |
| 2 | K | E | -2.6208 | |
| 3 | G | E | -2.5548 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -2.9309 | |
| 6 | G | E | 0.0000 | |
| 7 | H | E | -2.1784 | |
| 8 | G | E | -1.7878 | |
| 1 | G | F | -1.8430 | |
| 2 | K | F | -2.8563 | |
| 3 | G | F | -2.7776 | |
| 4 | H | F | -3.0094 | |
| 5 | K | F | -3.1702 | |
| 6 | G | F | -2.5696 | |
| 7 | H | F | -2.2084 | |
| 8 | G | F | -1.5389 | |
| 1 | G | G | -1.4504 | |
| 2 | K | G | -1.9426 | |
| 3 | G | G | -2.1104 | |
| 4 | H | G | -2.5874 | |
| 5 | K | G | -2.7965 | |
| 6 | G | G | 0.0000 | |
| 7 | H | G | -2.1451 | |
| 8 | G | G | -1.8721 | |
| 1 | G | H | -1.5838 | |
| 2 | K | H | -1.9411 | |
| 3 | G | H | -2.0160 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | -2.3771 | |
| 6 | G | H | 0.0000 | |
| 7 | H | H | -1.6889 | |
| 8 | G | H | -1.4740 | |
| 1 | G | I | -1.4760 | |
| 2 | K | I | -1.6328 | |
| 3 | G | I | -1.6615 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -1.9955 | |
| 6 | G | I | 0.0000 | |
| 7 | H | I | -1.5176 | |
| 8 | G | I | -1.2104 | |
| 1 | G | J | -1.4866 | |
| 2 | K | J | -1.6425 | |
| 3 | G | J | -1.6819 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -2.3638 | |
| 6 | G | J | 0.0000 | |
| 7 | H | J | -1.4526 | |
| 8 | G | J | -1.2040 | |
| 1 | G | K | -1.5083 | |
| 2 | K | K | -1.6968 | |
| 3 | G | K | -1.8128 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -2.4782 | |
| 6 | G | K | 0.0000 | |
| 7 | H | K | -1.7621 | |
| 8 | G | K | -1.2591 | |
| 1 | G | L | -1.5113 | |
| 2 | K | L | -1.7698 | |
| 3 | G | L | -1.7748 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -2.4927 | |
| 6 | G | L | 0.0000 | |
| 7 | H | L | -1.5229 | |
| 8 | G | L | -1.2928 | |
| 1 | G | M | -1.4933 | |
| 2 | K | M | -1.7654 | |
| 3 | G | M | -1.7307 | |
| 4 | H | M | 0.0000 | |
| 5 | K | M | -2.4015 | |
| 6 | G | M | 0.0000 | |
| 7 | H | M | -1.5254 | |
| 8 | G | M | -1.1867 | |
| 1 | G | N | -1.6600 | |
| 2 | K | N | -2.0419 | |
| 3 | G | N | -2.0796 | |
| 4 | H | N | 0.0000 | |
| 5 | K | N | -2.6724 | |
| 6 | G | N | 0.0000 | |
| 7 | H | N | -1.8318 | |
| 8 | G | N | -1.5513 | |
| 1 | G | O | -1.5011 | |
| 2 | K | O | -2.2503 | |
| 3 | G | O | -2.1520 | |
| 4 | H | O | -2.8366 | |
| 5 | K | O | -3.3421 | |
| 6 | G | O | -2.9985 | |
| 7 | H | O | -2.5123 | |
| 8 | G | O | -2.0281 | |
| 1 | G | P | -1.7997 | |
| 2 | K | P | -3.0116 | |
| 3 | G | P | -2.7342 | |
| 4 | H | P | -3.2899 | |
| 5 | K | P | -3.4158 | |
| 6 | G | P | -2.7906 | |
| 7 | H | P | -2.1125 | |
| 8 | G | P | -1.5830 | |
| 1 | G | Q | -1.9402 | |
| 2 | K | Q | -2.5401 | |
| 3 | G | Q | -2.6231 | |
| 4 | H | Q | 0.0000 | |
| 5 | K | Q | -3.2101 | |
| 6 | G | Q | 0.0000 | |
| 7 | H | Q | -2.0616 | |
| 8 | G | Q | -1.5472 | |
| 1 | G | R | -1.6699 | |
| 2 | K | R | -1.9053 | |
| 3 | G | R | -1.8014 | |
| 4 | H | R | 0.0000 | |
| 5 | K | R | -2.5580 | |
| 6 | G | R | 0.0000 | |
| 7 | H | R | -1.5275 | |
| 8 | G | R | -1.1753 | |
| 1 | G | S | -1.4954 | |
| 2 | K | S | -1.8045 | |
| 3 | G | S | -1.8314 | |
| 4 | H | S | 0.0000 | |
| 5 | K | S | -2.8997 | |
| 6 | G | S | 0.0000 | |
| 7 | H | S | -1.5779 | |
| 8 | G | S | -1.0559 | |
| 1 | G | T | -1.4320 | |
| 2 | K | T | -1.7207 | |
| 3 | G | T | -1.8452 | |
| 4 | H | T | 0.0000 | |
| 5 | K | T | -2.6126 | |
| 6 | G | T | 0.0000 | |
| 7 | H | T | -1.5206 | |
| 8 | G | T | -1.0944 |