Project name: ca6ed20ab449e80

Status: done

Started: 2026-05-21 12:46:37
Settings
Chain sequence(s) A: GKGHKGHG
C: GKGHKGHG
B: GKGHKGHG
E: GKGHKGHG
D: GKGHKGHG
G: GKGHKGHG
F: GKGHKGHG
I: GKGHKGHG
H: GKGHKGHG
K: GKGHKGHG
J: GKGHKGHG
M: GKGHKGHG
L: GKGHKGHG
O: GKGHKGHG
N: GKGHKGHG
Q: GKGHKGHG
P: GKGHKGHG
S: GKGHKGHG
R: GKGHKGHG
T: GKGHKGHG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:30)
Show buried residues

Minimal score value
-3.4158
Maximal score value
0.0
Average score
-1.5479
Total score value
-247.6673

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.4020
2 K A -1.7146
3 G A -1.6565
4 H A 0.0000
5 K A -2.3319
6 G A 0.0000
7 H A -1.4598
8 G A -1.0865
1 G B -1.3776
2 K B -1.6735
3 G B -1.5810
4 H B 0.0000
5 K B -2.1874
6 G B 0.0000
7 H B -1.3487
8 G B -1.1584
1 G C -1.3689
2 K C -1.7238
3 G C -1.6506
4 H C 0.0000
5 K C -2.1821
6 G C 0.0000
7 H C -1.6121
8 G C -1.2845
1 G D -1.4800
2 K D -2.0216
3 G D -1.7990
4 H D 0.0000
5 K D -2.3993
6 G D 0.0000
7 H D -1.6841
8 G D -1.7010
1 G E -1.7958
2 K E -2.6208
3 G E -2.5548
4 H E 0.0000
5 K E -2.9309
6 G E 0.0000
7 H E -2.1784
8 G E -1.7878
1 G F -1.8430
2 K F -2.8563
3 G F -2.7776
4 H F -3.0094
5 K F -3.1702
6 G F -2.5696
7 H F -2.2084
8 G F -1.5389
1 G G -1.4504
2 K G -1.9426
3 G G -2.1104
4 H G -2.5874
5 K G -2.7965
6 G G 0.0000
7 H G -2.1451
8 G G -1.8721
1 G H -1.5838
2 K H -1.9411
3 G H -2.0160
4 H H 0.0000
5 K H -2.3771
6 G H 0.0000
7 H H -1.6889
8 G H -1.4740
1 G I -1.4760
2 K I -1.6328
3 G I -1.6615
4 H I 0.0000
5 K I -1.9955
6 G I 0.0000
7 H I -1.5176
8 G I -1.2104
1 G J -1.4866
2 K J -1.6425
3 G J -1.6819
4 H J 0.0000
5 K J -2.3638
6 G J 0.0000
7 H J -1.4526
8 G J -1.2040
1 G K -1.5083
2 K K -1.6968
3 G K -1.8128
4 H K 0.0000
5 K K -2.4782
6 G K 0.0000
7 H K -1.7621
8 G K -1.2591
1 G L -1.5113
2 K L -1.7698
3 G L -1.7748
4 H L 0.0000
5 K L -2.4927
6 G L 0.0000
7 H L -1.5229
8 G L -1.2928
1 G M -1.4933
2 K M -1.7654
3 G M -1.7307
4 H M 0.0000
5 K M -2.4015
6 G M 0.0000
7 H M -1.5254
8 G M -1.1867
1 G N -1.6600
2 K N -2.0419
3 G N -2.0796
4 H N 0.0000
5 K N -2.6724
6 G N 0.0000
7 H N -1.8318
8 G N -1.5513
1 G O -1.5011
2 K O -2.2503
3 G O -2.1520
4 H O -2.8366
5 K O -3.3421
6 G O -2.9985
7 H O -2.5123
8 G O -2.0281
1 G P -1.7997
2 K P -3.0116
3 G P -2.7342
4 H P -3.2899
5 K P -3.4158
6 G P -2.7906
7 H P -2.1125
8 G P -1.5830
1 G Q -1.9402
2 K Q -2.5401
3 G Q -2.6231
4 H Q 0.0000
5 K Q -3.2101
6 G Q 0.0000
7 H Q -2.0616
8 G Q -1.5472
1 G R -1.6699
2 K R -1.9053
3 G R -1.8014
4 H R 0.0000
5 K R -2.5580
6 G R 0.0000
7 H R -1.5275
8 G R -1.1753
1 G S -1.4954
2 K S -1.8045
3 G S -1.8314
4 H S 0.0000
5 K S -2.8997
6 G S 0.0000
7 H S -1.5779
8 G S -1.0559
1 G T -1.4320
2 K T -1.7207
3 G T -1.8452
4 H T 0.0000
5 K T -2.6126
6 G T 0.0000
7 H T -1.5206
8 G T -1.0944
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Laboratory of Theory of Biopolymers 2018