| Chain sequence(s) |
A: SKGHKGH
C: SKGHKGH B: SKGHKGH D: SKGHKGH input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:08)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:08)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:08)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:09)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:58)
[INFO] Main: Simulation completed successfully. (00:00:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -2.5229 | |
| 2 | K | A | -3.2614 | |
| 3 | G | A | -2.7336 | |
| 4 | H | A | -3.2492 | |
| 5 | K | A | -3.8645 | |
| 6 | G | A | -2.6843 | |
| 7 | H | A | -2.4472 | |
| 1 | S | B | -1.7856 | |
| 2 | K | B | -3.3786 | |
| 3 | G | B | -3.3706 | |
| 4 | H | B | -3.7828 | |
| 5 | K | B | -3.9972 | |
| 6 | G | B | -2.4711 | |
| 7 | H | B | -2.5707 | |
| 1 | S | C | -2.1545 | |
| 2 | K | C | -3.7847 | |
| 3 | G | C | -3.9999 | |
| 4 | H | C | -3.6970 | |
| 5 | K | C | -4.1594 | |
| 6 | G | C | -2.5533 | |
| 7 | H | C | -2.3861 | |
| 1 | S | D | -2.9486 | |
| 2 | K | D | -4.1418 | |
| 3 | G | D | -3.3391 | |
| 4 | H | D | -4.2226 | |
| 5 | K | D | -3.6250 | |
| 6 | G | D | -2.3419 | |
| 7 | H | D | -2.2173 |