Project name: SKGHKGH4

Status: done

Started: 2026-05-21 12:28:27
Settings
Chain sequence(s) A: SKGHKGH
C: SKGHKGH
B: SKGHKGH
D: SKGHKGH
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:09)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:59)
Show buried residues

Minimal score value
-4.2226
Maximal score value
-1.7856
Average score
-3.1318
Total score value
-87.6909

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -2.5229
2 K A -3.2614
3 G A -2.7336
4 H A -3.2492
5 K A -3.8645
6 G A -2.6843
7 H A -2.4472
1 S B -1.7856
2 K B -3.3786
3 G B -3.3706
4 H B -3.7828
5 K B -3.9972
6 G B -2.4711
7 H B -2.5707
1 S C -2.1545
2 K C -3.7847
3 G C -3.9999
4 H C -3.6970
5 K C -4.1594
6 G C -2.5533
7 H C -2.3861
1 S D -2.9486
2 K D -4.1418
3 G D -3.3391
4 H D -4.2226
5 K D -3.6250
6 G D -2.3419
7 H D -2.2173
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018