Project name: query_structure

Status: done

Started: 2026-03-17 01:12:42
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRVMDMLLSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:43)
Show buried residues

Minimal score value
-3.4106
Maximal score value
1.6233
Average score
-0.6497
Total score value
-61.0731

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6233
2 S A 0.0676
3 D A -0.2756
4 V A -0.7478
5 P A 0.0000
6 R A -3.1917
7 D A -3.4106
8 L A 0.0000
9 E A -2.1009
10 V A 0.1251
11 V A 1.5529
12 A A 0.9072
13 A A 0.3194
14 T A -0.3366
15 P A -1.0552
16 T A -0.9605
17 S A -0.5258
18 L A 0.0000
19 L A 0.7682
20 I A 0.0000
21 S A -1.1048
22 W A 0.0000
23 D A -3.1993
24 A A -1.6328
25 P A 0.0000
26 A A 0.2813
27 V A 0.3497
28 T A -0.2712
29 V A -0.5852
30 R A -1.5600
31 Y A -0.7699
32 Y A 0.0000
33 R A -0.9080
34 I A 0.0000
35 T A -0.7234
36 Y A -0.4085
37 G A 0.0000
38 E A -1.8060
39 T A -1.4688
40 G A -1.3394
41 G A -1.5114
42 N A -1.5602
43 S A -0.9315
44 P A -0.4188
45 V A 0.2675
46 Q A -1.2100
47 E A -1.9122
48 F A -0.8407
49 T A -0.3581
50 V A -0.5144
51 P A -0.9762
52 G A -1.1566
53 S A -1.1504
54 K A -1.8300
55 S A -1.2183
56 T A -0.6520
57 A A 0.0000
58 T A 0.2622
59 I A 0.0000
60 S A -0.6584
61 G A -1.0277
62 L A 0.0000
63 K A -2.3834
64 P A -1.6057
65 G A -1.3031
66 V A -1.5783
67 D A -2.6595
68 Y A 0.0000
69 T A -0.9140
70 I A 0.0000
71 T A -0.5722
72 V A 0.0000
73 Y A -0.0689
74 A A 0.0000
75 V A 0.0000
76 T A 0.0141
77 G A -0.4541
78 R A -1.1661
79 V A 0.8400
80 M A 0.6977
81 D A -0.6554
82 M A 0.4841
83 L A 1.0892
84 L A 1.1121
85 S A 0.0000
86 K A -1.3514
87 P A -0.8679
88 I A -0.6297
89 S A -0.8501
90 I A -0.7288
91 N A -1.8635
92 Y A -1.6217
93 R A -2.7135
94 T A -1.5385
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Laboratory of Theory of Biopolymers 2018