| Chain sequence(s) |
A: FTGHKTF
C: FTGHKTF B: FTGHKTF E: FTGHKTF D: FTGHKTF G: FTGHKTF F: FTGHKTF I: FTGHKTF H: FTGHKTF K: FTGHKTF J: FTGHKTF M: FTGHKTF L: FTGHKTF O: FTGHKTF N: FTGHKTF Q: FTGHKTF P: FTGHKTF S: FTGHKTF R: FTGHKTF T: FTGHKTF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:10:42)
[INFO] Main: Simulation completed successfully. (00:10:48)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.8409 | |
| 2 | T | A | 0.8952 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -1.0570 | |
| 6 | T | A | 0.6185 | |
| 7 | F | A | 1.7932 | |
| 1 | F | B | 0.1750 | |
| 2 | T | B | -0.2797 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | -0.4648 | |
| 5 | K | B | -0.2591 | |
| 6 | T | B | 1.3425 | |
| 7 | F | B | 2.1268 | |
| 1 | F | C | 0.7682 | |
| 2 | T | C | 0.6396 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -0.0139 | |
| 6 | T | C | 0.9349 | |
| 7 | F | C | 2.0630 | |
| 1 | F | D | 0.3013 | |
| 2 | T | D | -0.1790 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | 0.8384 | |
| 6 | T | D | 1.3962 | |
| 7 | F | D | 2.3394 | |
| 1 | F | E | 0.0000 | |
| 2 | T | E | -0.3571 | |
| 3 | G | E | 0.0000 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -0.6310 | |
| 6 | T | E | 0.5565 | |
| 7 | F | E | 1.8562 | |
| 1 | F | F | -0.0918 | |
| 2 | T | F | -0.5567 | |
| 3 | G | F | 0.0000 | |
| 4 | H | F | -0.8322 | |
| 5 | K | F | 0.0817 | |
| 6 | T | F | 0.0000 | |
| 7 | F | F | 2.3068 | |
| 1 | F | G | 0.3284 | |
| 2 | T | G | 0.4445 | |
| 3 | G | G | 0.0000 | |
| 4 | H | G | -0.0813 | |
| 5 | K | G | -0.8459 | |
| 6 | T | G | -0.0093 | |
| 7 | F | G | 1.2312 | |
| 1 | F | H | 0.2227 | |
| 2 | T | H | -0.5198 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | 0.6157 | |
| 5 | K | H | 1.5598 | |
| 6 | T | H | 1.6955 | |
| 7 | F | H | 2.4739 | |
| 1 | F | I | 2.9369 | |
| 2 | T | I | 0.0000 | |
| 3 | G | I | 0.0715 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -1.1336 | |
| 6 | T | I | 0.1177 | |
| 7 | F | I | 1.3275 | |
| 1 | F | J | 1.9001 | |
| 2 | T | J | 0.2896 | |
| 3 | G | J | -0.2724 | |
| 4 | H | J | -0.2395 | |
| 5 | K | J | 0.1054 | |
| 6 | T | J | 0.7842 | |
| 7 | F | J | 2.0416 | |
| 1 | F | K | -0.2556 | |
| 2 | T | K | -0.1725 | |
| 3 | G | K | 0.0000 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -0.9377 | |
| 6 | T | K | 0.4458 | |
| 7 | F | K | 1.6758 | |
| 1 | F | L | 0.0424 | |
| 2 | T | L | -0.2804 | |
| 3 | G | L | 0.0000 | |
| 4 | H | L | -0.1805 | |
| 5 | K | L | -0.0153 | |
| 6 | T | L | 0.8423 | |
| 7 | F | L | 1.9182 | |
| 1 | F | M | 1.1148 | |
| 2 | T | M | 0.0487 | |
| 3 | G | M | 0.0000 | |
| 4 | H | M | 0.0000 | |
| 5 | K | M | -0.5356 | |
| 6 | T | M | 0.5928 | |
| 7 | F | M | 1.7616 | |
| 1 | F | N | -0.4270 | |
| 2 | T | N | -0.4789 | |
| 3 | G | N | -0.5735 | |
| 4 | H | N | 0.0000 | |
| 5 | K | N | -0.0914 | |
| 6 | T | N | 0.6334 | |
| 7 | F | N | 1.6801 | |
| 1 | F | O | 0.0803 | |
| 2 | T | O | -0.1086 | |
| 3 | G | O | 0.0000 | |
| 4 | H | O | -0.6334 | |
| 5 | K | O | -0.8342 | |
| 6 | T | O | 0.2515 | |
| 7 | F | O | 1.5825 | |
| 1 | F | P | 0.2137 | |
| 2 | T | P | 0.1349 | |
| 3 | G | P | 0.0000 | |
| 4 | H | P | -0.0263 | |
| 5 | K | P | 0.0660 | |
| 6 | T | P | 0.3120 | |
| 7 | F | P | 1.4077 | |
| 1 | F | Q | 0.3463 | |
| 2 | T | Q | 0.0736 | |
| 3 | G | Q | -0.0378 | |
| 4 | H | Q | 0.3002 | |
| 5 | K | Q | 1.0310 | |
| 6 | T | Q | 1.0775 | |
| 7 | F | Q | 2.1867 | |
| 1 | F | R | 1.0606 | |
| 2 | T | R | 0.4985 | |
| 3 | G | R | 0.2032 | |
| 4 | H | R | 0.1540 | |
| 5 | K | R | -0.5800 | |
| 6 | T | R | 0.1341 | |
| 7 | F | R | 1.0898 | |
| 1 | F | S | 0.8687 | |
| 2 | T | S | 0.4575 | |
| 3 | G | S | 0.0000 | |
| 4 | H | S | -0.0103 | |
| 5 | K | S | 0.3778 | |
| 6 | T | S | 0.9257 | |
| 7 | F | S | 1.6833 | |
| 1 | F | T | 1.3549 | |
| 2 | T | T | 0.3558 | |
| 3 | G | T | 0.0000 | |
| 4 | H | T | 0.0000 | |
| 5 | K | T | -0.7176 | |
| 6 | T | T | 0.3638 | |
| 7 | F | T | 1.3410 |