Project name: FTGHKT20

Status: done

Started: 2026-04-14 09:12:24
Settings
Chain sequence(s) A: FTGHKTF
C: FTGHKTF
B: FTGHKTF
E: FTGHKTF
D: FTGHKTF
G: FTGHKTF
F: FTGHKTF
I: FTGHKTF
H: FTGHKTF
K: FTGHKTF
J: FTGHKTF
M: FTGHKTF
L: FTGHKTF
O: FTGHKTF
N: FTGHKTF
Q: FTGHKTF
P: FTGHKTF
S: FTGHKTF
R: FTGHKTF
T: FTGHKTF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:10:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:48)
Show buried residues

Minimal score value
-1.1336
Maximal score value
2.9369
Average score
0.4071
Total score value
56.9883

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.8409
2 T A 0.8952
3 G A 0.0000
4 H A 0.0000
5 K A -1.0570
6 T A 0.6185
7 F A 1.7932
1 F B 0.1750
2 T B -0.2797
3 G B 0.0000
4 H B -0.4648
5 K B -0.2591
6 T B 1.3425
7 F B 2.1268
1 F C 0.7682
2 T C 0.6396
3 G C 0.0000
4 H C 0.0000
5 K C -0.0139
6 T C 0.9349
7 F C 2.0630
1 F D 0.3013
2 T D -0.1790
3 G D 0.0000
4 H D 0.0000
5 K D 0.8384
6 T D 1.3962
7 F D 2.3394
1 F E 0.0000
2 T E -0.3571
3 G E 0.0000
4 H E 0.0000
5 K E -0.6310
6 T E 0.5565
7 F E 1.8562
1 F F -0.0918
2 T F -0.5567
3 G F 0.0000
4 H F -0.8322
5 K F 0.0817
6 T F 0.0000
7 F F 2.3068
1 F G 0.3284
2 T G 0.4445
3 G G 0.0000
4 H G -0.0813
5 K G -0.8459
6 T G -0.0093
7 F G 1.2312
1 F H 0.2227
2 T H -0.5198
3 G H 0.0000
4 H H 0.6157
5 K H 1.5598
6 T H 1.6955
7 F H 2.4739
1 F I 2.9369
2 T I 0.0000
3 G I 0.0715
4 H I 0.0000
5 K I -1.1336
6 T I 0.1177
7 F I 1.3275
1 F J 1.9001
2 T J 0.2896
3 G J -0.2724
4 H J -0.2395
5 K J 0.1054
6 T J 0.7842
7 F J 2.0416
1 F K -0.2556
2 T K -0.1725
3 G K 0.0000
4 H K 0.0000
5 K K -0.9377
6 T K 0.4458
7 F K 1.6758
1 F L 0.0424
2 T L -0.2804
3 G L 0.0000
4 H L -0.1805
5 K L -0.0153
6 T L 0.8423
7 F L 1.9182
1 F M 1.1148
2 T M 0.0487
3 G M 0.0000
4 H M 0.0000
5 K M -0.5356
6 T M 0.5928
7 F M 1.7616
1 F N -0.4270
2 T N -0.4789
3 G N -0.5735
4 H N 0.0000
5 K N -0.0914
6 T N 0.6334
7 F N 1.6801
1 F O 0.0803
2 T O -0.1086
3 G O 0.0000
4 H O -0.6334
5 K O -0.8342
6 T O 0.2515
7 F O 1.5825
1 F P 0.2137
2 T P 0.1349
3 G P 0.0000
4 H P -0.0263
5 K P 0.0660
6 T P 0.3120
7 F P 1.4077
1 F Q 0.3463
2 T Q 0.0736
3 G Q -0.0378
4 H Q 0.3002
5 K Q 1.0310
6 T Q 1.0775
7 F Q 2.1867
1 F R 1.0606
2 T R 0.4985
3 G R 0.2032
4 H R 0.1540
5 K R -0.5800
6 T R 0.1341
7 F R 1.0898
1 F S 0.8687
2 T S 0.4575
3 G S 0.0000
4 H S -0.0103
5 K S 0.3778
6 T S 0.9257
7 F S 1.6833
1 F T 1.3549
2 T T 0.3558
3 G T 0.0000
4 H T 0.0000
5 K T -0.7176
6 T T 0.3638
7 F T 1.3410
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018