Project name: RFC13

Status: done

Started: 2025-07-15 15:39:05
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Chain sequence(s) A: SLEETARKFAQMVLDNVKTGSKGAKRVTVNIKYIGGKDIEKAEEIMKQTEKEITDYVTNKAKAELASINLKILSPTEPIKPGESYSIEQHTVTTTAPEPP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:59)
Show buried residues

Minimal score value
-3.8606
Maximal score value
1.2969
Average score
-1.5147
Total score value
-151.47

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.9974
2 L A -1.4319
3 E A -2.5414
4 E A -2.5669
5 T A -2.0085
6 A A 0.0000
7 R A -3.4015
8 K A -3.0463
9 F A -1.4588
10 A A 0.0000
11 Q A -2.1606
12 M A -1.2398
13 V A 0.0000
14 L A -1.5140
15 D A -1.7687
16 N A -2.0339
17 V A 0.0000
18 K A -2.0840
19 T A -1.8350
20 G A -1.7966
21 S A 0.0000
22 K A -2.8758
23 G A -2.2334
24 A A -2.7284
25 K A -3.6772
26 R A -3.5017
27 V A 0.0000
28 T A -0.8943
29 V A 0.0000
30 N A -1.5731
31 I A 0.0000
32 K A -1.9905
33 Y A -0.2307
34 I A 0.4337
35 G A -0.3415
36 G A -1.3176
37 K A -2.8902
38 D A -2.8870
39 I A -2.3095
40 E A -3.5678
41 K A -3.6119
42 A A 0.0000
43 E A -2.9519
44 E A -3.5428
45 I A -2.7674
46 M A 0.0000
47 K A -3.0779
48 Q A -3.0917
49 T A 0.0000
50 E A -2.8467
51 K A -3.5670
52 E A -3.1167
53 I A 0.0000
54 T A -2.3077
55 D A -2.9408
56 Y A -2.4390
57 V A 0.0000
58 T A -2.5234
59 N A -3.1263
60 K A -3.2968
61 A A -3.1411
62 K A -3.8606
63 A A 0.0000
64 E A -3.3608
65 L A -1.5845
66 A A -1.0640
67 S A -0.5789
68 I A -0.3090
69 N A -0.9109
70 L A -1.0977
71 K A -1.2013
72 I A -0.1931
73 L A 0.1192
74 S A -0.5233
75 P A -0.5544
76 T A -1.2138
77 E A -2.1158
78 P A -0.8913
79 I A -0.4186
80 K A -2.0585
81 P A -1.6152
82 G A -1.6883
83 E A -2.2499
84 S A -0.9845
85 Y A -0.0123
86 S A -0.3030
87 I A -0.1148
88 E A -1.7736
89 Q A -1.8381
90 H A -1.5122
91 T A -0.4955
92 V A 1.2969
93 T A 0.4566
94 T A 0.2991
95 T A -0.1809
96 A A -0.6085
97 P A -1.2172
98 E A -2.1212
99 P A -1.3061
100 P A -0.8646
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Laboratory of Theory of Biopolymers 2018