| Chain sequence(s) |
A: SCSALPSSYTLTSNSKLVDLFTHFNGTKVTTKAAFACRQAELSELIQRYELGTLPGRPSTLTASFSGNTLTINCGEGGKSISFTVTITYPSSGTAPYPAIIGFGGGSIPQPDGVALINFNNDEIAAQKDISSRGQGKFYDLYGSSHSAGAMTAWAWGVSRVIDALELTPAAKIDTTKIGVTGCSRNGKGALVAGAFEKRIVLTLPQESGMGGSACWRISDYLKSQGKNIQTASEIVGEYPWFSTTFNSYVNNVSLLPFDHHSLAALIAPRGLYVIDNDIDWLGPESCTGCMYAARKAWQALGVPDNMGYSQVGSHAHCAFPSSQQADLTAFVNKFLLGQSTNTAIFRSDFSPNPSQWIDWTTPTLS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:47)
[INFO] Main: Simulation completed successfully. (00:05:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | 0.0026 | |
| 2 | C | A | 0.3754 | |
| 3 | S | A | -0.0665 | |
| 4 | A | A | -0.0915 | |
| 5 | L | A | -0.1666 | |
| 6 | P | A | -0.3318 | |
| 7 | S | A | -0.3099 | |
| 8 | S | A | -0.2264 | |
| 9 | Y | A | 0.0868 | |
| 10 | T | A | 0.1090 | |
| 11 | L | A | 0.1490 | |
| 12 | T | A | -0.1329 | |
| 13 | S | A | -0.6361 | |
| 14 | N | A | -0.8862 | |
| 15 | S | A | -0.8884 | |
| 16 | K | A | -1.3505 | |
| 17 | L | A | 0.0000 | |
| 18 | V | A | -0.4259 | |
| 19 | D | A | -0.6288 | |
| 20 | L | A | 0.0000 | |
| 21 | F | A | 0.0000 | |
| 22 | T | A | -1.0284 | |
| 23 | H | A | -0.9192 | |
| 24 | F | A | -0.4826 | |
| 25 | N | A | -1.5084 | |
| 26 | G | A | -1.3829 | |
| 27 | T | A | -1.4295 | |
| 28 | K | A | -2.0319 | |
| 29 | V | A | 0.0000 | |
| 30 | T | A | -0.8589 | |
| 31 | T | A | -0.9065 | |
| 32 | K | A | -1.2786 | |
| 33 | A | A | -0.5005 | |
| 34 | A | A | -0.5881 | |
| 35 | F | A | 0.0000 | |
| 36 | A | A | -0.1886 | |
| 37 | C | A | 0.0196 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.2372 | |
| 40 | A | A | -0.1638 | |
| 41 | E | A | 0.0000 | |
| 42 | L | A | 0.0000 | |
| 43 | S | A | -0.6201 | |
| 44 | E | A | -1.1167 | |
| 45 | L | A | 0.0000 | |
| 46 | I | A | 0.0000 | |
| 47 | Q | A | -0.7178 | |
| 48 | R | A | -0.8144 | |
| 49 | Y | A | -0.4855 | |
| 50 | E | A | 0.0000 | |
| 51 | L | A | 0.0000 | |
| 52 | G | A | 0.0000 | |
| 53 | T | A | -0.3506 | |
| 54 | L | A | -0.2791 | |
| 55 | P | A | -0.5345 | |
| 56 | G | A | -1.3388 | |
| 57 | R | A | -2.1794 | |
| 58 | P | A | 0.0000 | |
| 59 | S | A | -1.0078 | |
| 60 | T | A | -0.9021 | |
| 61 | L | A | -0.3230 | |
| 62 | T | A | 0.0727 | |
| 63 | A | A | -0.0279 | |
| 64 | S | A | 0.0363 | |
| 65 | F | A | -0.1918 | |
| 66 | S | A | -0.5837 | |
| 67 | G | A | -0.9401 | |
| 68 | N | A | -1.1096 | |
| 69 | T | A | -0.7354 | |
| 70 | L | A | 0.0000 | |
| 71 | T | A | -0.2899 | |
| 72 | I | A | 0.0000 | |
| 73 | N | A | -0.5489 | |
| 74 | C | A | 0.0000 | |
| 75 | G | A | -1.4619 | |
| 76 | E | A | -1.7697 | |
| 77 | G | A | -1.5210 | |
| 78 | G | A | -1.7575 | |
| 79 | K | A | -2.6734 | |
| 80 | S | A | -1.8049 | |
| 81 | I | A | 0.0000 | |
| 82 | S | A | -0.4307 | |
| 83 | F | A | 0.0000 | |
| 84 | T | A | -0.6677 | |
| 85 | V | A | 0.0000 | |
| 86 | T | A | -0.8133 | |
| 87 | I | A | 0.0000 | |
| 88 | T | A | -0.2965 | |
| 89 | Y | A | -0.2795 | |
| 90 | P | A | -0.6327 | |
| 91 | S | A | -0.6650 | |
| 92 | S | A | -0.8802 | |
| 93 | G | A | -0.8470 | |
| 94 | T | A | -0.4769 | |
| 95 | A | A | -0.5018 | |
| 96 | P | A | -0.8069 | |
| 97 | Y | A | -0.4031 | |
| 98 | P | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | I | A | 0.0000 | |
| 101 | I | A | 0.0000 | |
| 102 | G | A | 0.0000 | |
| 103 | F | A | 0.0000 | |
| 104 | G | A | -1.4948 | |
| 105 | G | A | -1.0366 | |
| 106 | G | A | -0.5906 | |
| 107 | S | A | -0.2732 | |
| 108 | I | A | 0.0000 | |
| 109 | P | A | -0.7491 | |
| 110 | Q | A | -1.0193 | |
| 111 | P | A | -1.3291 | |
| 112 | D | A | -2.0677 | |
| 113 | G | A | 0.0000 | |
| 114 | V | A | 0.0000 | |
| 115 | A | A | 0.0000 | |
| 116 | L | A | -0.1631 | |
| 117 | I | A | 0.0000 | |
| 118 | N | A | -1.4121 | |
| 119 | F | A | 0.0000 | |
| 120 | N | A | -2.6107 | |
| 121 | N | A | 0.0000 | |
| 122 | D | A | -3.1433 | |
| 123 | E | A | -3.0813 | |
| 124 | I | A | 0.0000 | |
| 125 | A | A | 0.0000 | |
| 126 | A | A | -2.0389 | |
| 127 | Q | A | 0.0000 | |
| 128 | K | A | -2.0067 | |
| 129 | D | A | -1.0154 | |
| 130 | I | A | 0.2588 | |
| 131 | S | A | -0.4758 | |
| 132 | S | A | 0.0000 | |
| 133 | R | A | -0.8859 | |
| 134 | G | A | 0.0000 | |
| 135 | Q | A | -2.2727 | |
| 136 | G | A | -2.2869 | |
| 137 | K | A | -2.0647 | |
| 138 | F | A | 0.0000 | |
| 139 | Y | A | 0.0000 | |
| 140 | D | A | -2.5724 | |
| 141 | L | A | 0.0000 | |
| 142 | Y | A | -1.0342 | |
| 143 | G | A | -1.2692 | |
| 144 | S | A | -1.2615 | |
| 145 | S | A | -0.6694 | |
| 146 | H | A | -0.4783 | |
| 147 | S | A | -0.3689 | |
| 148 | A | A | 0.0000 | |
| 149 | G | A | 0.0000 | |
| 150 | A | A | 0.0000 | |
| 151 | M | A | 0.0000 | |
| 152 | T | A | 0.0000 | |
| 153 | A | A | 0.0000 | |
| 154 | W | A | 0.0000 | |
| 155 | A | A | 0.0000 | |
| 156 | W | A | 0.0000 | |
| 157 | G | A | 0.0000 | |
| 158 | V | A | 0.0000 | |
| 159 | S | A | -0.7477 | |
| 160 | R | A | 0.0000 | |
| 161 | V | A | 0.0000 | |
| 162 | I | A | 0.0000 | |
| 163 | D | A | -0.7617 | |
| 164 | A | A | 0.0000 | |
| 165 | L | A | 0.0000 | |
| 166 | E | A | -1.2424 | |
| 167 | L | A | 0.5482 | |
| 168 | T | A | 0.0000 | |
| 169 | P | A | -0.6095 | |
| 170 | A | A | -0.3640 | |
| 171 | A | A | 0.0000 | |
| 172 | K | A | -1.0287 | |
| 173 | I | A | 0.0000 | |
| 174 | D | A | -0.9876 | |
| 175 | T | A | -1.0640 | |
| 176 | T | A | -0.7065 | |
| 177 | K | A | -0.6903 | |
| 178 | I | A | 0.0000 | |
| 179 | G | A | 0.0000 | |
| 180 | V | A | 0.0000 | |
| 181 | T | A | 0.0000 | |
| 182 | G | A | 0.0000 | |
| 183 | C | A | 0.0000 | |
| 184 | S | A | -0.7425 | |
| 185 | R | A | -1.3295 | |
| 186 | N | A | -1.0701 | |
| 187 | G | A | 0.0000 | |
| 188 | K | A | 0.0000 | |
| 189 | G | A | 0.0000 | |
| 190 | A | A | 0.0000 | |
| 191 | L | A | 0.0000 | |
| 192 | V | A | 0.0000 | |
| 193 | A | A | 0.0000 | |
| 194 | G | A | 0.0000 | |
| 195 | A | A | 0.0000 | |
| 196 | F | A | 0.0000 | |
| 197 | E | A | 0.0000 | |
| 198 | K | A | -1.9459 | |
| 199 | R | A | -1.4600 | |
| 200 | I | A | 0.0000 | |
| 201 | V | A | -0.3788 | |
| 202 | L | A | 0.0000 | |
| 203 | T | A | 0.0000 | |
| 204 | L | A | 0.0000 | |
| 205 | P | A | 0.0000 | |
| 206 | Q | A | 0.0000 | |
| 207 | E | A | 0.0000 | |
| 208 | S | A | 0.0000 | |
| 209 | G | A | 0.0000 | |
| 210 | M | A | 0.0000 | |
| 211 | G | A | 0.0000 | |
| 212 | G | A | 0.0000 | |
| 213 | S | A | 0.0000 | |
| 214 | A | A | 0.0000 | |
| 215 | C | A | 0.0000 | |
| 216 | W | A | 0.0000 | |
| 217 | R | A | 0.0000 | |
| 218 | I | A | 0.0000 | |
| 219 | S | A | 0.0000 | |
| 220 | D | A | -2.3760 | |
| 221 | Y | A | -1.0632 | |
| 222 | L | A | 0.0000 | |
| 223 | K | A | -2.3072 | |
| 224 | S | A | -1.7927 | |
| 225 | Q | A | -2.1864 | |
| 226 | G | A | -2.0584 | |
| 227 | K | A | -2.3759 | |
| 228 | N | A | -2.1224 | |
| 229 | I | A | 0.0000 | |
| 230 | Q | A | 0.0000 | |
| 231 | T | A | 0.0000 | |
| 232 | A | A | 0.0000 | |
| 233 | S | A | -1.6296 | |
| 234 | E | A | -1.3559 | |
| 235 | I | A | 0.0000 | |
| 236 | V | A | -0.5881 | |
| 237 | G | A | -0.9052 | |
| 238 | E | A | -0.9689 | |
| 239 | Y | A | -0.4592 | |
| 240 | P | A | 0.0000 | |
| 241 | W | A | 0.0000 | |
| 242 | F | A | 0.0000 | |
| 243 | S | A | 0.0000 | |
| 244 | T | A | -0.5907 | |
| 245 | T | A | -0.5951 | |
| 246 | F | A | 0.0000 | |
| 247 | N | A | -1.6668 | |
| 248 | S | A | -1.1198 | |
| 249 | Y | A | -0.9315 | |
| 250 | V | A | 0.0000 | |
| 251 | N | A | -2.2167 | |
| 252 | N | A | -1.7907 | |
| 253 | V | A | 0.0000 | |
| 254 | S | A | -0.9325 | |
| 255 | L | A | -0.2645 | |
| 256 | L | A | 0.0000 | |
| 257 | P | A | 0.0930 | |
| 258 | F | A | 0.0000 | |
| 259 | D | A | 0.0000 | |
| 260 | H | A | 0.0000 | |
| 261 | H | A | 0.0000 | |
| 262 | S | A | 0.0000 | |
| 263 | L | A | 0.0000 | |
| 264 | A | A | 0.0000 | |
| 265 | A | A | 0.0000 | |
| 266 | L | A | 0.0000 | |
| 267 | I | A | 0.0000 | |
| 268 | A | A | 0.0000 | |
| 269 | P | A | -0.4552 | |
| 270 | R | A | -0.5066 | |
| 271 | G | A | 0.0000 | |
| 272 | L | A | 0.0000 | |
| 273 | Y | A | 0.0000 | |
| 274 | V | A | 0.0000 | |
| 275 | I | A | 0.0000 | |
| 276 | D | A | 0.0000 | |
| 277 | N | A | 0.0000 | |
| 278 | D | A | -1.7454 | |
| 279 | I | A | -0.8885 | |
| 280 | D | A | -1.4441 | |
| 281 | W | A | -0.5708 | |
| 282 | L | A | 0.0000 | |
| 283 | G | A | 0.0000 | |
| 284 | P | A | 0.0000 | |
| 285 | E | A | -0.9329 | |
| 286 | S | A | 0.0000 | |
| 287 | C | A | 0.0000 | |
| 288 | T | A | 0.0000 | |
| 289 | G | A | 0.0000 | |
| 290 | C | A | 0.0000 | |
| 291 | M | A | 0.0000 | |
| 292 | Y | A | 0.2035 | |
| 293 | A | A | 0.0000 | |
| 294 | A | A | 0.0000 | |
| 295 | R | A | -0.5886 | |
| 296 | K | A | -0.8060 | |
| 297 | A | A | 0.0000 | |
| 298 | W | A | 0.0000 | |
| 299 | Q | A | -1.2989 | |
| 300 | A | A | 0.0000 | |
| 301 | L | A | 0.0000 | |
| 302 | G | A | -0.8830 | |
| 303 | V | A | -0.4072 | |
| 304 | P | A | -0.8003 | |
| 305 | D | A | -0.9044 | |
| 306 | N | A | -0.7403 | |
| 307 | M | A | 0.0000 | |
| 308 | G | A | 0.0000 | |
| 309 | Y | A | 0.0000 | |
| 310 | S | A | 0.0000 | |
| 311 | Q | A | 0.0000 | |
| 312 | V | A | -0.6310 | |
| 313 | G | A | -0.8425 | |
| 314 | S | A | -0.5102 | |
| 315 | H | A | -0.3816 | |
| 316 | A | A | -0.2689 | |
| 317 | H | A | -0.4041 | |
| 318 | C | A | 0.0226 | |
| 319 | A | A | 0.0576 | |
| 320 | F | A | 0.0627 | |
| 321 | P | A | -0.2161 | |
| 322 | S | A | -0.5874 | |
| 323 | S | A | -0.4562 | |
| 324 | Q | A | 0.0000 | |
| 325 | Q | A | -0.9893 | |
| 326 | A | A | -0.4590 | |
| 327 | D | A | 0.0000 | |
| 328 | L | A | 0.0000 | |
| 329 | T | A | -0.6380 | |
| 330 | A | A | -0.7126 | |
| 331 | F | A | 0.0000 | |
| 332 | V | A | 0.0000 | |
| 333 | N | A | -1.0837 | |
| 334 | K | A | -1.0589 | |
| 335 | F | A | -0.3570 | |
| 336 | L | A | 0.0000 | |
| 337 | L | A | -0.6084 | |
| 338 | G | A | -1.0422 | |
| 339 | Q | A | -1.6238 | |
| 340 | S | A | -1.2021 | |
| 341 | T | A | -1.2898 | |
| 342 | N | A | -1.6193 | |
| 343 | T | A | 0.0000 | |
| 344 | A | A | -0.6308 | |
| 345 | I | A | 0.0000 | |
| 346 | F | A | -0.4068 | |
| 347 | R | A | -1.8685 | |
| 348 | S | A | -1.7771 | |
| 349 | D | A | -2.2679 | |
| 350 | F | A | -1.2182 | |
| 351 | S | A | -0.8117 | |
| 352 | P | A | -0.5166 | |
| 353 | N | A | -0.6380 | |
| 354 | P | A | -0.7791 | |
| 355 | S | A | -0.9871 | |
| 356 | Q | A | -1.1247 | |
| 357 | W | A | 0.0000 | |
| 358 | I | A | -1.0146 | |
| 359 | D | A | -1.9084 | |
| 360 | W | A | -0.8425 | |
| 361 | T | A | -0.4635 | |
| 362 | T | A | -0.3956 | |
| 363 | P | A | -0.5577 | |
| 364 | T | A | -0.5778 | |
| 365 | L | A | 0.0000 | |
| 366 | S | A | -0.6376 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine