Project name: query_structure

Status: done

Started: 2026-03-17 00:01:55
Settings
Chain sequence(s) A: SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFAAAVQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVHLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT
C: QVQLVESGGGLVQAGGSLRLSCAASGPTGAMAWFRQAPGMEREFVGGISGSETDTYYADFVKGRLTVDRDNVKNTVDLQMNSLKPEDTAVYYCAARRRVTLFTSRADYDFWGQGTQVTV
B: SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFAAAVQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVHLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITH
D: AQVQLVESGGGLVQAGGSLRLSCAASGPTGAMAWFRQAPGMEREFVGGISGSETDTYYADFVKGRLTVDRDNVKNTVDLQMNSLKPEDTAVYYCAARRRVTLFTSRADYDFWGQGTQVTV
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:07)
Show buried residues

Minimal score value
-4.1532
Maximal score value
1.4474
Average score
-0.7719
Total score value
-534.1814

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 S A -1.6277
3 K A -2.4576
4 G A 0.0000
5 E A -1.9149
6 E A -2.4974
7 L A -1.1004
8 F A 0.0000
9 T A -0.2868
10 G A 0.4632
11 V A 1.4474
12 V A 0.0000
13 P A -0.4013
14 I A 0.0000
15 L A -0.3212
16 V A 0.0000
17 E A -1.4992
18 L A 0.0000
19 D A -3.2376
20 G A 0.0000
21 D A -2.2009
22 V A 0.0000
23 N A -1.9332
24 G A -1.6485
25 H A -2.2410
26 K A -2.7137
27 F A 0.0000
28 S A -1.6816
29 V A 0.0000
30 S A -0.5247
31 G A 0.0000
32 E A 0.0000
33 G A -0.4028
34 E A -0.6102
35 G A 0.0000
36 D A 0.3271
37 A A 0.0000
38 T A 0.2915
39 Y A 1.0739
40 G A 0.0000
41 K A -0.0652
42 L A 0.0000
43 T A -0.1924
44 L A 0.0000
45 K A -0.1981
46 F A 0.0000
47 I A 0.0000
48 C A 0.0000
49 T A -0.4429
50 T A -1.0857
51 G A -1.8922
52 K A -2.4262
53 L A 0.0000
54 P A -1.0544
55 V A 0.0000
56 P A 0.0000
57 W A 0.0000
58 P A 0.0000
59 T A 0.0000
60 L A 0.0000
61 V A 0.0000
62 T A 0.0105
63 T A 0.0000
64 F A 0.0000
68 V A -0.0048
69 Q A 0.0000
70 C A 0.0000
71 F A 0.0000
72 A A 0.0000
73 R A -1.0373
74 Y A 0.0000
75 P A -1.7635
76 D A -2.7896
77 H A -2.0158
78 M A 0.0000
79 K A -2.5778
80 Q A -2.0989
81 H A -1.5375
82 D A 0.0000
83 F A 0.0000
84 F A 0.0000
85 K A 0.0000
86 S A -0.8899
87 A A 0.0000
88 M A 0.0000
89 P A -1.4390
90 E A -1.9473
91 G A 0.0000
92 Y A 0.0000
93 V A -0.6330
94 Q A 0.0000
95 E A -1.6896
96 R A 0.0000
97 T A -0.7239
98 I A 0.0000
99 F A 0.1774
100 F A 0.0000
101 K A -1.8272
102 D A -2.5842
103 D A -2.2184
104 G A 0.0000
105 N A -0.9065
106 Y A 0.0000
107 K A -2.4929
108 T A 0.0000
109 R A -3.1581
110 A A 0.0000
111 E A -2.0889
112 V A 0.0000
113 K A -1.6450
114 F A 0.0000
115 E A -1.7310
116 G A -1.7741
117 D A -2.2349
118 T A -1.4233
119 L A 0.0000
120 V A 0.0000
121 N A 0.0000
122 R A -2.4949
123 I A 0.0000
124 E A -3.9867
125 L A 0.0000
126 K A -2.9684
127 G A 0.0000
128 I A -1.0169
129 D A -2.1458
130 F A 0.0000
131 K A -3.6608
132 E A -3.7889
133 D A -3.5424
134 G A 0.0000
135 N A -2.1698
136 I A 0.0000
137 L A -1.7176
138 G A -2.1004
139 H A -2.1180
140 K A -2.5161
141 L A 0.0000
142 E A -2.0261
143 Y A -0.8189
144 N A -0.6311
145 Y A -0.7454
146 N A -1.0025
147 S A -0.9049
148 H A 0.0000
149 N A -0.9071
150 V A 0.0000
151 Y A 0.3544
152 I A 0.0000
153 M A -0.9492
154 A A -1.7544
155 D A -2.3549
156 K A -3.1956
157 Q A -3.1698
158 K A -3.4375
159 N A -2.7891
160 G A 0.0000
161 I A 0.0000
162 K A -1.3896
163 V A 0.0000
164 N A -0.3947
165 F A 0.0000
166 K A -1.8420
167 I A 0.0000
168 R A -1.4084
169 H A 0.0000
170 N A -1.4644
171 I A 0.0000
172 E A -3.4115
173 D A -3.0946
174 G A -1.9871
175 S A -1.0753
176 V A -0.5534
177 H A 0.0000
178 L A -0.9502
179 A A 0.0000
180 D A -0.7337
181 H A 0.0000
182 Y A 0.0861
183 Q A 0.0000
184 Q A -1.1728
185 N A 0.0000
186 T A -0.7114
187 P A -0.7888
188 I A -0.2017
189 G A -1.1759
190 D A -2.1334
191 G A -1.4002
192 P A -0.6999
193 V A -0.1491
194 L A 0.1285
195 L A -0.3724
196 P A 0.0000
197 D A -2.2803
198 N A -1.8202
199 H A 0.0000
200 Y A 0.0572
201 L A 0.0000
202 S A -0.3803
203 T A -0.5913
204 Q A -0.9746
205 S A -0.3915
206 A A 0.0316
207 L A -0.0311
208 S A -0.6090
209 K A -1.5302
210 D A -1.6161
211 P A -1.6660
212 N A -2.6582
213 E A 0.0000
214 K A -2.4334
215 R A 0.0000
216 D A -1.3380
217 H A 0.0000
218 M A 0.0000
219 V A 0.0779
220 L A 0.0000
221 L A 0.3266
222 E A -0.0058
223 F A 0.4886
224 V A 0.0000
225 T A -0.2664
226 A A 0.0000
227 A A -0.3497
228 G A -0.5323
229 I A -0.4879
230 T A -0.1256
2 S B -1.8393
3 K B -2.4096
4 G B 0.0000
5 E B -1.8052
6 E B -2.4210
7 L B -1.0258
8 F B 0.0000
9 T B -0.2283
10 G B 0.5423
11 V B 1.4164
12 V B 0.0000
13 P B -0.5910
14 I B 0.0000
15 L B -0.5042
16 V B 0.0000
17 E B -1.5146
18 L B 0.0000
19 D B -3.2671
20 G B 0.0000
21 D B -2.4081
22 V B 0.0000
23 N B -2.0942
24 G B -1.6934
25 H B -2.1735
26 K B -2.7332
27 F B 0.0000
28 S B -1.6931
29 V B 0.0000
30 S B -0.5293
31 G B 0.0000
32 E B 0.0000
33 G B -0.6961
34 E B -1.1002
35 G B 0.0000
36 D B 0.0000
37 A B 0.0000
38 T B 0.3425
39 Y B 1.0809
40 G B 0.0000
41 K B -0.1719
42 L B 0.0000
43 T B -0.3626
44 L B 0.0000
45 K B -0.3048
46 F B 0.0000
47 I B 0.0000
48 C B 0.0000
49 T B -0.4324
50 T B -1.0077
51 G B -1.8069
52 K B -2.3448
53 L B 0.0000
54 P B -1.0511
55 V B 0.0000
56 P B 0.0000
57 W B 0.0000
58 P B 0.0000
59 T B 0.0000
60 L B 0.0000
61 V B 0.0000
62 T B 0.0024
63 T B 0.0000
64 F B 0.0000
68 V B -0.0040
69 Q B -0.1652
70 C B 0.0000
71 F B 0.0000
72 A B 0.0000
73 R B -1.1109
74 Y B 0.0000
75 P B -1.7870
76 D B -2.7609
77 H B -1.9961
78 M B 0.0000
79 K B -2.4441
80 Q B -2.1253
81 H B -1.5774
82 D B 0.0000
83 F B 0.0000
84 F B 0.0000
85 K B 0.0000
86 S B -0.9934
87 A B 0.0000
88 M B 0.0000
89 P B -1.5039
90 E B -2.1124
91 G B 0.0000
92 Y B 0.0000
93 V B -0.7556
94 Q B 0.0000
95 E B -2.4735
96 R B 0.0000
97 T B -0.5923
98 I B 0.0000
99 F B 0.2305
100 F B 0.0000
101 K B -2.1925
102 D B -2.9776
103 D B -2.5161
104 G B 0.0000
105 N B -0.8696
106 Y B 0.0000
107 K B -2.1044
108 T B 0.0000
109 R B -3.5019
110 A B 0.0000
111 E B -1.9286
112 V B 0.0000
113 K B -1.5491
114 F B 0.0000
115 E B -1.7785
116 G B -1.7834
117 D B -2.2288
118 T B -1.4803
119 L B 0.0000
120 V B 0.0000
121 N B 0.0000
122 R B -2.3966
123 I B 0.0000
124 E B -4.0275
125 L B 0.0000
126 K B -2.8849
127 G B 0.0000
128 I B -1.2356
129 D B -2.5322
130 F B 0.0000
131 K B -3.9205
132 E B -4.1532
133 D B -3.7518
134 G B 0.0000
135 N B -2.1843
136 I B 0.0000
137 L B -1.8250
138 G B -2.1868
139 H B -1.9572
140 K B -2.5081
141 L B 0.0000
142 E B -2.0609
143 Y B -0.8605
144 N B -0.7007
145 Y B -0.8214
146 N B -1.0998
147 S B -1.1578
148 H B 0.0000
149 N B -1.4843
150 V B 0.0000
151 Y B -0.1612
152 I B 0.0000
153 M B -0.8919
154 A B -1.6408
155 D B 0.0000
156 K B -3.1422
157 Q B -3.1324
158 K B -3.2822
159 N B -3.1065
160 G B 0.0000
161 I B 0.0000
162 K B -1.0596
163 V B 0.0000
164 N B -0.4607
165 F B 0.0000
166 K B -1.4245
167 I B 0.0000
168 R B -1.1995
169 H B 0.0000
170 N B -1.4617
171 I B 0.0000
172 E B -3.4019
173 D B -3.0781
174 G B -1.9531
175 S B -0.9705
176 V B -0.3604
177 H B 0.0000
178 L B -0.7555
179 A B 0.0000
180 D B -0.5407
181 H B 0.0000
182 Y B 0.3267
183 Q B 0.0000
184 Q B -1.0221
185 N B 0.0000
186 T B -0.7880
187 P B -0.8978
188 I B -0.2350
189 G B -1.2841
190 D B -2.2723
191 G B -1.5663
192 P B -0.8864
193 V B -0.4061
194 L B -0.4002
195 L B -0.7370
196 P B 0.0000
197 D B -2.2651
198 N B -1.7123
199 H B 0.0000
200 Y B -0.2257
201 L B 0.0000
202 S B -0.7105
203 T B -0.8364
204 Q B -1.2633
205 S B 0.0000
206 A B -0.0431
207 L B -0.0700
208 S B -0.6665
209 K B -1.6003
210 D B -1.5679
211 P B -1.5503
212 N B -2.3199
213 E B 0.0000
214 K B -1.6094
215 R B 0.0000
216 D B -1.1199
217 H B 0.0000
218 M B 0.0000
219 V B -0.0281
220 L B 0.0000
221 L B 0.2784
222 E B -0.1598
223 F B 0.2257
224 V B 0.0000
225 T B -0.4141
226 A B 0.0000
227 A B -0.3992
228 G B -0.6529
229 I B -0.6786
230 T B -0.5602
231 H B -1.3361
4 A D -0.7458
5 Q D -1.6516
6 V D -1.2964
7 Q D -1.0252
8 L D 0.0000
9 V D 1.1419
10 E D 0.2103
11 S D -0.6276
12 G D -1.2555
13 G D -0.9450
14 G D -0.0214
15 L D 1.1267
16 V D 0.2385
17 Q D -0.9802
18 A D -1.3741
19 G D -1.2620
20 G D -0.9076
21 S D -1.4573
22 L D -1.2465
23 R D -2.5451
24 L D 0.0000
25 S D -0.9070
26 C D 0.0000
27 A D -0.1921
28 A D 0.0000
29 S D -0.7531
30 G D -0.8333
31 P D -0.8884
32 T D -1.2956
33 G D 0.0000
34 A D 0.0000
35 M D 0.0000
36 A D 0.0000
37 W D 0.0000
38 F D 0.0000
39 R D -0.7563
40 Q D -1.0168
41 A D -0.8888
42 P D -0.4579
43 G D -0.5658
44 M D -0.4066
45 E D -1.9073
46 R D -1.8709
47 E D -1.8309
48 F D 0.0000
49 V D 0.0000
50 G D 0.0000
51 G D 0.0000
52 I D 0.0000
53 S D 0.0000
54 G D -1.0159
55 S D -0.8492
56 E D -1.6646
57 T D -0.7782
58 D D -0.5077
59 T D -0.3906
60 Y D 0.1323
61 Y D -0.3704
62 A D 0.0000
63 D D -2.0885
64 F D -0.9897
65 V D 0.0000
66 K D -2.3329
67 G D -1.7434
68 R D -1.5801
69 L D 0.0000
70 T D -1.2333
71 V D 0.0000
72 D D -2.2570
73 R D 0.0000
74 D D -1.4983
75 N D -1.2062
76 V D 0.1969
77 K D -1.4532
78 N D -1.1484
79 T D -0.9728
80 V D 0.0000
81 D D -1.5898
82 L D 0.0000
83 Q D -2.2197
84 M D 0.0000
85 N D -2.0212
86 S D -1.2734
87 L D 0.0000
88 K D -1.8725
89 P D -1.6485
90 E D -2.1440
91 D D 0.0000
92 T D -0.7760
93 A D 0.0000
94 V D -0.3489
95 Y D 0.0000
96 Y D -0.1701
97 C D 0.0000
98 A D 0.0000
99 A D 0.0000
100 R D 0.0000
101 R D -2.6223
102 R D -1.8841
103 V D -0.7001
104 T D 0.0000
105 L D 0.0000
106 F D 0.0000
107 T D 0.0000
108 S D 0.0000
109 R D -1.8922
110 A D -1.0870
111 D D -1.3908
112 Y D 0.0000
113 D D -1.6714
114 F D -0.9543
115 W D -0.2182
116 G D 0.0000
117 Q D -0.8748
118 G D 0.0000
119 T D -0.7146
120 Q D -0.9385
121 V D 0.0000
122 T D -0.1003
123 V D -0.4369
5 Q C -1.6022
6 V C -1.1807
7 Q C -0.9968
8 L C 0.0000
9 V C 1.0970
10 E C 0.0332
11 S C -0.6480
12 G C -1.3013
13 G C -0.8757
14 G C 0.0117
15 L C 1.1584
16 V C 0.2034
17 Q C -1.1230
18 A C -1.5844
19 G C -1.3260
20 G C -0.8721
21 S C -1.2472
22 L C -0.9185
23 R C -2.2949
24 L C 0.0000
25 S C -0.8365
26 C C 0.0000
27 A C -0.2055
28 A C 0.0000
29 S C -0.6853
30 G C -0.7414
31 P C -0.7988
32 T C -0.8900
33 G C 0.0000
34 A C 0.0000
35 M C 0.0000
36 A C 0.0000
37 W C 0.0000
38 F C 0.0000
39 R C 0.0000
40 Q C -1.0046
41 A C -0.8734
42 P C -0.4591
43 G C -0.5843
44 M C -0.4188
45 E C -1.9594
46 R C -2.0942
47 E C -2.1202
48 F C 0.0000
49 V C 0.0000
50 G C 0.0000
51 G C 0.0000
52 I C 0.0000
53 S C 0.0000
54 G C -0.8457
55 S C -0.8567
56 E C -1.6803
57 T C -0.7977
58 D C -0.5220
59 T C -0.3973
60 Y C 0.0599
61 Y C -0.4500
62 A C 0.0000
63 D C -2.2277
64 F C -1.0047
65 V C 0.0000
66 K C -2.3289
67 G C -1.6120
68 R C -1.2249
69 L C 0.0000
70 T C -0.9558
71 V C 0.0000
72 D C -2.1978
73 R C 0.0000
74 D C -1.4491
75 N C -0.9812
76 V C 0.3070
77 K C -1.3874
78 N C -1.0362
79 T C -0.8829
80 V C 0.0000
81 D C -1.4692
82 L C 0.0000
83 Q C -1.6757
84 M C 0.0000
85 N C -1.4322
86 S C -1.1875
87 L C 0.0000
88 K C -2.4897
89 P C -1.9906
90 E C -2.3684
91 D C 0.0000
92 T C -0.9918
93 A C 0.0000
94 V C -0.3662
95 Y C 0.0000
96 Y C -0.1800
97 C C 0.0000
98 A C 0.0000
99 A C 0.0000
100 R C 0.0000
101 R C -2.2755
102 R C -1.2436
103 V C -0.3534
104 T C 0.0000
105 L C 0.0000
106 F C 0.0000
107 T C 0.0000
108 S C 0.0000
109 R C -2.4713
110 A C -1.3543
111 D C -1.4273
112 Y C 0.0000
113 D C -1.5745
114 F C -0.8743
115 W C -0.2416
116 G C -0.2409
117 Q C -0.9318
118 G C -0.6055
119 T C -0.7652
120 Q C -0.9444
121 V C 0.0000
122 T C -0.1839
123 V C -0.6434
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Laboratory of Theory of Biopolymers 2018