Project name: Amrita [mutate: WF3A, WF3B] [mutate: FY3A, FY3B]

Status: done

Started: 2026-05-21 06:55:54
Settings
Chain sequence(s) A: KDFSFY
B: KDFSFY
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FY3A,FY3B
Energy difference between WT (input) and mutated protein (by FoldX) 0.332361 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:06)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:16)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:23)
Show buried residues

Minimal score value
-1.4607
Maximal score value
1.9664
Average score
0.5628
Total score value
6.7533

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.4509
2 D A -1.1620
3 Y A 1.4883 mutated: FY3A
4 S A 1.4121
5 F A 1.9664
6 Y A 1.0786
1 K B -1.4607
2 D B -1.1448
3 Y B 1.5036 mutated: FY3B
4 S B 1.5983
5 F B 1.9204
6 Y B 1.0040
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Laboratory of Theory of Biopolymers 2018