| Chain sequence(s) |
A: KLVFFAE
C: KLVFFAE B: KLVFFAE E: KLVFFAE D: KLVFFAE G: KLVFFAE F: KLVFFAE I: KLVFFAE H: KLVFFAE K: KLVFFAE J: KLVFFAE L: KLVFFAE input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:47)
[INFO] Main: Simulation completed successfully. (00:02:49)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -2.3977 | |
| 2 | L | A | -0.8235 | |
| 3 | V | A | 0.0000 | |
| 4 | F | A | 0.0000 | |
| 5 | F | A | -0.3303 | |
| 6 | A | A | -1.5387 | |
| 7 | E | A | -2.4802 | |
| 1 | K | B | -1.8223 | |
| 2 | L | B | 0.0000 | |
| 3 | V | B | 0.5023 | |
| 4 | F | B | 0.0000 | |
| 5 | F | B | 0.3283 | |
| 6 | A | B | -1.5364 | |
| 7 | E | B | -2.3362 | |
| 1 | K | C | -1.9995 | |
| 2 | L | C | 0.0000 | |
| 3 | V | C | 0.9778 | |
| 4 | F | C | 0.0000 | |
| 5 | F | C | 1.2949 | |
| 6 | A | C | -0.6614 | |
| 7 | E | C | -1.8219 | |
| 1 | K | D | -2.0517 | |
| 2 | L | D | -0.4576 | |
| 3 | V | D | 0.6476 | |
| 4 | F | D | 0.0000 | |
| 5 | F | D | 0.2359 | |
| 6 | A | D | -1.1285 | |
| 7 | E | D | -2.2612 | |
| 1 | K | E | -2.2061 | |
| 2 | L | E | -1.0374 | |
| 3 | V | E | 0.0000 | |
| 4 | F | E | 0.0000 | |
| 5 | F | E | -0.1403 | |
| 6 | A | E | 0.0000 | |
| 7 | E | E | -2.5063 | |
| 1 | K | F | -2.3268 | |
| 2 | L | F | -0.8593 | |
| 3 | V | F | 0.0000 | |
| 4 | F | F | 0.0000 | |
| 5 | F | F | -0.6412 | |
| 6 | A | F | -1.5879 | |
| 7 | E | F | -2.6114 | |
| 1 | K | G | -2.2194 | |
| 2 | L | G | -0.9839 | |
| 3 | V | G | 0.0000 | |
| 4 | F | G | 0.0000 | |
| 5 | F | G | -0.1945 | |
| 6 | A | G | -1.4772 | |
| 7 | E | G | -2.4304 | |
| 1 | K | H | -1.7657 | |
| 2 | L | H | 0.0000 | |
| 3 | V | H | 0.7661 | |
| 4 | F | H | 0.0000 | |
| 5 | F | H | 0.4576 | |
| 6 | A | H | -1.4026 | |
| 7 | E | H | -2.2682 | |
| 1 | K | I | -1.8112 | |
| 2 | L | I | 0.0000 | |
| 3 | V | I | 0.6802 | |
| 4 | F | I | 0.0000 | |
| 5 | F | I | 0.8883 | |
| 6 | A | I | -0.8731 | |
| 7 | E | I | -1.9893 | |
| 1 | K | J | -2.2374 | |
| 2 | L | J | -0.7166 | |
| 3 | V | J | 0.7778 | |
| 4 | F | J | 0.0000 | |
| 5 | F | J | 0.0252 | |
| 6 | A | J | -1.2359 | |
| 7 | E | J | -2.2902 | |
| 1 | K | K | -2.3239 | |
| 2 | L | K | -0.8559 | |
| 3 | V | K | 0.0246 | |
| 4 | F | K | 0.0000 | |
| 5 | F | K | -0.2200 | |
| 6 | A | K | -1.7198 | |
| 7 | E | K | -2.5635 | |
| 1 | K | L | -2.3515 | |
| 2 | L | L | -0.8697 | |
| 3 | V | L | -0.0592 | |
| 4 | F | L | 0.0000 | |
| 5 | F | L | -0.2189 | |
| 6 | A | L | -1.4548 | |
| 7 | E | L | -2.5174 |