Project name: A?16-22_12

Status: done

Started: 2026-06-19 11:25:44
Settings
Chain sequence(s) A: KLVFFAE
C: KLVFFAE
B: KLVFFAE
E: KLVFFAE
D: KLVFFAE
G: KLVFFAE
F: KLVFFAE
I: KLVFFAE
H: KLVFFAE
K: KLVFFAE
J: KLVFFAE
L: KLVFFAE
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:49)
Show buried residues

Minimal score value
-2.6114
Maximal score value
1.2949
Average score
-0.8215
Total score value
-69.0074

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.3977
2 L A -0.8235
3 V A 0.0000
4 F A 0.0000
5 F A -0.3303
6 A A -1.5387
7 E A -2.4802
1 K B -1.8223
2 L B 0.0000
3 V B 0.5023
4 F B 0.0000
5 F B 0.3283
6 A B -1.5364
7 E B -2.3362
1 K C -1.9995
2 L C 0.0000
3 V C 0.9778
4 F C 0.0000
5 F C 1.2949
6 A C -0.6614
7 E C -1.8219
1 K D -2.0517
2 L D -0.4576
3 V D 0.6476
4 F D 0.0000
5 F D 0.2359
6 A D -1.1285
7 E D -2.2612
1 K E -2.2061
2 L E -1.0374
3 V E 0.0000
4 F E 0.0000
5 F E -0.1403
6 A E 0.0000
7 E E -2.5063
1 K F -2.3268
2 L F -0.8593
3 V F 0.0000
4 F F 0.0000
5 F F -0.6412
6 A F -1.5879
7 E F -2.6114
1 K G -2.2194
2 L G -0.9839
3 V G 0.0000
4 F G 0.0000
5 F G -0.1945
6 A G -1.4772
7 E G -2.4304
1 K H -1.7657
2 L H 0.0000
3 V H 0.7661
4 F H 0.0000
5 F H 0.4576
6 A H -1.4026
7 E H -2.2682
1 K I -1.8112
2 L I 0.0000
3 V I 0.6802
4 F I 0.0000
5 F I 0.8883
6 A I -0.8731
7 E I -1.9893
1 K J -2.2374
2 L J -0.7166
3 V J 0.7778
4 F J 0.0000
5 F J 0.0252
6 A J -1.2359
7 E J -2.2902
1 K K -2.3239
2 L K -0.8559
3 V K 0.0246
4 F K 0.0000
5 F K -0.2200
6 A K -1.7198
7 E K -2.5635
1 K L -2.3515
2 L L -0.8697
3 V L -0.0592
4 F L 0.0000
5 F L -0.2189
6 A L -1.4548
7 E L -2.5174
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018