Project name: 1ywo_1

Status: done

Started: 2026-01-09 08:40:15
Settings
Chain sequence(s) A: SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:01)
Show buried residues

Minimal score value
-3.8056
Maximal score value
0.5786
Average score
-1.3964
Total score value
-76.8009

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
5 S A -1.7228
6 A A -1.4175
7 V A 0.0000
8 K A -1.1661
9 A A 0.0000
10 L A 0.0027
11 F A 0.2858
12 D A -1.7796
13 Y A 0.0000
14 K A -2.4765
15 A A -2.4724
16 Q A -3.0826
17 R A -3.8056
18 E A -3.3816
19 D A -2.8140
20 E A 0.0000
21 L A 0.0000
22 T A -1.2283
23 F A 0.0000
24 T A -1.3455
25 K A -1.3595
26 S A -0.7248
27 A A 0.0000
28 I A 0.5786
29 I A 0.0000
30 Q A -2.0209
31 N A -2.8368
32 V A -2.5388
33 E A -3.2016
34 K A -3.1943
35 Q A -2.7586
36 D A -2.6171
37 G A -1.6933
38 G A -1.3266
39 W A -1.0028
40 W A -1.6255
41 R A -2.0545
42 G A 0.0000
43 D A -1.9401
44 Y A -0.8176
45 G A -0.8050
46 G A -1.3180
47 K A -1.8605
48 K A -2.7527
49 Q A -2.1768
50 L A -1.3056
51 W A -0.9866
52 F A 0.0000
53 P A 0.0000
54 S A -1.1352
55 N A -0.9270
56 Y A -0.3233
57 V A -1.0092
58 E A -2.1951
59 E A -2.4677
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Laboratory of Theory of Biopolymers 2018