| Chain sequence(s) |
H: QVQLQQSGAELLKPGASVKVSCKASGYTFTNYWMHWVKQRPGRGLEWIGRIDPDNGDSRYNEKFKTKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARRAYYSKDALDYWGQGTSVTVSS
L: DIVLTQSPASLAVSLGQRATISCRASESVDNYGISFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVETDDVATYYCQQSNKDPLTFGAGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:38)
[INFO] Main: Simulation completed successfully. (00:01:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4586 | |
| 2 | V | H | -0.8168 | |
| 3 | Q | H | -1.5890 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0703 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.9765 | |
| 8 | G | H | -0.7116 | |
| 9 | A | H | -0.0053 | |
| 11 | E | H | -0.0115 | |
| 12 | L | H | 0.9517 | |
| 13 | L | H | -0.2484 | |
| 14 | K | H | -1.7487 | |
| 15 | P | H | -1.4341 | |
| 16 | G | H | -1.1442 | |
| 17 | A | H | -0.9288 | |
| 18 | S | H | -0.9609 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.1981 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.6509 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.5961 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.0985 | |
| 27 | G | H | -0.9458 | |
| 28 | Y | H | -0.4870 | |
| 29 | T | H | -0.4670 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.5284 | |
| 36 | N | H | -1.0336 | |
| 37 | Y | H | -0.0987 | |
| 38 | W | H | -0.2555 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -1.0878 | |
| 45 | R | H | -1.6338 | |
| 46 | P | H | -1.2119 | |
| 47 | G | H | -1.6418 | |
| 48 | R | H | -2.4876 | |
| 49 | G | H | -1.4557 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.4655 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.7652 | |
| 56 | I | H | 0.0000 | |
| 57 | D | H | -1.5659 | |
| 58 | P | H | 0.0000 | |
| 59 | D | H | -2.9620 | |
| 62 | N | H | -2.4030 | |
| 63 | G | H | -1.7259 | |
| 64 | D | H | -1.6839 | |
| 65 | S | H | -1.1475 | |
| 66 | R | H | -1.9686 | |
| 67 | Y | H | -1.9333 | |
| 68 | N | H | -2.6412 | |
| 69 | E | H | -3.4944 | |
| 70 | K | H | -3.2100 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.0651 | |
| 74 | T | H | -1.6561 | |
| 75 | K | H | -1.4550 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.6793 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2889 | |
| 80 | V | H | -0.6465 | |
| 81 | D | H | -1.1736 | |
| 82 | K | H | -1.8492 | |
| 83 | P | H | -0.9375 | |
| 84 | S | H | -0.8410 | |
| 85 | S | H | -0.9512 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.1708 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.9813 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.7712 | |
| 93 | S | H | -0.8416 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.3090 | |
| 96 | S | H | -1.4549 | |
| 97 | E | H | -2.0127 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6487 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.0030 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | R | H | 0.1985 | |
| 108 | A | H | 0.0000 | |
| 109 | Y | H | 1.2563 | |
| 110 | Y | H | 1.4416 | |
| 111 | S | H | 0.4771 | |
| 112 | K | H | 0.0229 | |
| 113 | D | H | 0.1910 | |
| 114 | A | H | 0.0000 | |
| 115 | L | H | 0.0000 | |
| 116 | D | H | -0.2685 | |
| 117 | Y | H | 0.0937 | |
| 118 | W | H | -0.5704 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.8374 | |
| 121 | G | H | -1.0226 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.1516 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1006 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5541 | |
| 128 | S | H | -0.7113 | |
| 1 | D | L | -2.1175 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6044 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.4822 | |
| 6 | Q | L | -0.5327 | |
| 7 | S | L | -0.5717 | |
| 8 | P | L | -0.4667 | |
| 9 | A | L | -0.5264 | |
| 10 | S | L | -1.1127 | |
| 11 | L | L | -0.8503 | |
| 12 | A | L | -1.0733 | |
| 13 | V | L | 0.0000 | |
| 14 | S | L | -1.5236 | |
| 15 | L | L | -0.9054 | |
| 16 | G | L | -1.5815 | |
| 17 | Q | L | -2.6578 | |
| 18 | R | L | -2.8964 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6268 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.8808 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.6350 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.5457 | |
| 27 | E | L | -2.8636 | |
| 28 | S | L | -2.4880 | |
| 29 | V | L | 0.0000 | |
| 30 | D | L | -1.4614 | |
| 31 | N | L | -0.7473 | |
| 34 | Y | L | 0.8526 | |
| 35 | G | L | -0.1023 | |
| 36 | I | L | 0.0286 | |
| 37 | S | L | -0.7328 | |
| 38 | F | L | -0.5717 | |
| 39 | M | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.9014 | |
| 44 | Q | L | -1.2327 | |
| 45 | K | L | -1.5202 | |
| 46 | P | L | -1.0434 | |
| 47 | G | L | -1.3884 | |
| 48 | Q | L | -2.0890 | |
| 49 | P | L | -1.3538 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.3941 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.5224 | |
| 56 | R | L | -0.6792 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.8764 | |
| 66 | N | L | -1.2199 | |
| 67 | L | L | -0.2973 | |
| 68 | E | L | -0.5870 | |
| 69 | S | L | -0.5010 | |
| 70 | G | L | -0.4824 | |
| 71 | I | L | -0.2676 | |
| 72 | P | L | -0.1973 | |
| 74 | A | L | -0.2185 | |
| 75 | R | L | -0.8302 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.5214 | |
| 78 | G | L | -0.5739 | |
| 79 | S | L | -0.8887 | |
| 80 | G | L | -1.4762 | |
| 83 | S | L | -1.7650 | |
| 84 | R | L | -2.9916 | |
| 85 | T | L | -2.6618 | |
| 86 | D | L | -2.6347 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7835 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.7841 | |
| 91 | I | L | 0.0000 | |
| 92 | N | L | -2.0978 | |
| 93 | P | L | -1.8984 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.8333 | |
| 96 | T | L | -1.4571 | |
| 97 | D | L | -1.9164 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | -0.9712 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | 0.0000 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | N | L | -1.5703 | |
| 109 | K | L | -2.7839 | |
| 114 | D | L | -2.3307 | |
| 115 | P | L | -2.1885 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | -0.4276 | |
| 118 | F | L | 0.2205 | |
| 119 | G | L | 0.0000 | |
| 120 | A | L | -0.4562 | |
| 121 | G | L | -0.8314 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -2.0968 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -2.2001 | |
| 126 | L | L | -1.3141 | |
| 127 | K | L | -1.8854 |