Project name: B93tp [mutate: YA42A]

Status: done

Started: 2025-08-07 22:34:39
Settings
Chain sequence(s) A: MARESEFRLTKAQREEVSKLSRSVKAKTTRLLKNYGQDFTAYISPKSPDDFKSLNEFNAFKKRAENFTDRSNRDFQFVQNQYGVVISKSELDEILRDTKKAQETAEKILDKFNDVEVISGGKSTGFTVGENKELLAKPDKGFGRIEDFDFESVRTQEGLDRFAARAKNRSKEAYYEESLRRLQDNFIRSVEGTFNSDADDVVEKLRNLPADDFYELFSIYDEISFENFDSENALGMASESILERVRMYVNAYFDGKSDMSLKGF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues YA42A
Energy difference between WT (input) and mutated protein (by FoldX) 1.35437 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:03:12)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:03:25)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:16)
Show buried residues

Minimal score value
-4.1717
Maximal score value
1.0873
Average score
-1.6162
Total score value
-426.6872

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3565
2 A A -0.8356
3 R A -2.7637
4 E A -3.0971
5 S A -2.6448
6 E A -3.2462
7 F A -2.1083
8 R A -3.0757
9 L A 0.0000
10 T A -1.8058
11 K A -2.7440
12 A A -1.8965
13 Q A -2.2631
14 R A -3.1060
15 E A -3.4383
16 E A -3.0957
17 V A 0.0000
18 S A -2.6324
19 K A -3.2437
20 L A 0.0000
21 S A 0.0000
22 R A -3.2828
23 S A -2.3207
24 V A 0.0000
25 K A -2.8260
26 A A -1.9362
27 K A -1.6674
28 T A 0.0000
29 T A -2.1228
30 R A -3.0089
31 L A 0.0000
32 L A -1.7813
33 K A -2.7223
34 N A -1.8623
35 Y A -1.1704
36 G A -1.5055
37 Q A -1.5208
38 D A -2.0634
39 F A -0.7540
40 T A -0.6473
41 A A -0.2056
42 A A -0.3550 mutated: YA42A
43 I A 0.0000
44 S A -0.7052
45 P A -1.7047
46 K A -2.1818
47 S A -1.8450
48 P A -2.9798
49 D A -3.4725
50 D A -3.6217
51 F A 0.0000
52 K A -3.1132
53 S A -1.7245
54 L A -0.4505
55 N A -1.6849
56 E A -2.0421
57 F A 0.0000
58 N A -2.0028
59 A A -1.9907
60 F A 0.0000
61 K A -3.1381
62 K A -3.8444
63 R A -3.8871
64 A A 0.0000
65 E A -4.0874
66 N A -3.7836
67 F A 0.0000
68 T A 0.0000
69 D A -3.2543
70 R A -3.0392
71 S A -2.1142
72 N A -2.5981
73 R A -2.7063
74 D A -2.4851
75 F A -1.6245
76 Q A -1.6955
77 F A -0.6117
78 V A 0.0014
79 Q A -0.6979
80 N A 0.0000
81 Q A -1.5105
82 Y A -0.6779
83 G A -0.8649
84 V A 0.0000
85 V A -0.3308
86 I A 0.0000
87 S A 0.0000
88 K A -1.9552
89 S A -2.4214
90 E A -2.8892
91 L A -1.7183
92 D A -2.1251
93 E A -3.3749
94 I A 0.0000
95 L A -2.1561
96 R A -3.2789
97 D A -3.2447
98 T A 0.0000
99 K A -3.2995
100 K A -3.1622
101 A A 0.0000
102 Q A -3.3829
103 E A -3.4750
104 T A 0.0000
105 A A 0.0000
106 E A -3.6291
107 K A -3.5166
108 I A -2.6204
109 L A 0.0000
110 D A -3.5497
111 K A -3.3417
112 F A 0.0000
113 N A -2.6833
114 D A -2.8535
115 V A -1.8554
116 E A -1.9821
117 V A 0.0000
118 I A -1.0068
119 S A -1.3446
120 G A -1.1639
121 G A -1.2527
122 K A -2.0861
123 S A -1.3058
124 T A -0.8756
125 G A -0.7256
126 F A -0.1054
127 T A -1.3587
128 V A 0.0000
129 G A -2.0850
130 E A -1.6841
131 N A -0.8593
132 K A -1.2998
133 E A -1.6129
134 L A 0.7002
135 L A 0.6849
136 A A -0.4150
137 K A -1.3170
138 P A -1.6189
139 D A 0.0000
140 K A -1.2641
141 G A -1.1201
142 F A 0.0000
143 G A -1.7200
144 R A -2.9282
145 I A -2.4101
146 E A -3.3904
147 D A -3.2758
148 F A -2.2350
149 D A -2.6141
150 F A 0.0000
151 E A -2.3208
152 S A -1.7171
153 V A -1.9048
154 R A -2.4072
155 T A -2.0599
156 Q A -2.7815
157 E A -3.6179
158 G A -2.7795
159 L A 0.0000
160 D A -3.5827
161 R A -3.4815
162 F A -2.3061
163 A A -2.5277
164 A A -2.3072
165 R A -2.6377
166 A A 0.0000
167 K A -3.2916
168 N A -2.3975
169 R A -2.4275
170 S A -2.8935
171 K A -2.5472
172 E A -2.5206
173 A A -1.9623
174 Y A -1.8484
175 Y A 0.0000
176 E A -3.7063
177 E A -3.5926
178 S A -2.6659
179 L A 0.0000
180 R A -4.1717
181 R A -4.0158
182 L A 0.0000
183 Q A 0.0000
184 D A -3.8479
185 N A -2.7968
186 F A 0.0000
187 I A 0.0000
188 R A -3.2362
189 S A -2.2643
190 V A 0.0000
191 E A -3.2519
192 G A -2.1629
193 T A -1.7029
194 F A -1.8415
195 N A -2.9699
196 S A -2.6393
197 D A -3.2722
198 A A 0.0000
199 D A -3.7429
200 D A -2.7030
201 V A 0.0000
202 V A 0.0000
203 E A -3.7246
204 K A -2.7517
205 L A 0.0000
206 R A -3.7001
207 N A -2.6651
208 L A 0.0000
209 P A -1.2625
210 A A -2.5000
211 D A -1.6562
212 D A 0.0000
213 F A 0.0000
214 Y A 0.0000
215 E A 0.0000
216 L A 0.0000
217 F A 0.0000
218 S A -0.4906
219 I A 0.0000
220 Y A -0.9118
221 D A -1.3590
222 E A -1.1816
223 I A 0.0000
224 S A 0.0000
225 F A -1.3183
226 E A -2.4624
227 N A -1.6396
228 F A 0.0000
229 D A -3.0982
230 S A -2.5632
231 E A -2.7251
232 N A -2.0757
233 A A -0.9438
234 L A 0.5870
235 G A 0.1751
236 M A 0.5376
237 A A -0.0171
238 S A 0.0000
239 E A -1.9380
240 S A -1.3808
241 I A -1.1088
242 L A 0.0000
243 E A -2.2149
244 R A -1.7697
245 V A 0.0000
246 R A -1.0565
247 M A -0.3503
248 Y A 0.0000
249 V A 0.0000
250 N A -0.7815
251 A A -1.2111
252 Y A -0.7939
253 F A -0.2263
254 D A -1.9580
255 G A -2.1834
256 K A -2.7078
257 S A -2.1813
258 D A -2.4016
259 M A 0.0000
260 S A -1.2950
261 L A -1.2226
262 K A -1.7426
263 G A -0.5316
264 F A 1.0873
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Laboratory of Theory of Biopolymers 2018