| Chain sequence(s) |
A: VDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:06)
[INFO] Main: Simulation completed successfully. (00:02:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | A | -0.6567 | |
| 2 | D | A | -1.8573 | |
| 3 | A | A | -0.6719 | |
| 4 | F | A | 0.0000 | |
| 5 | L | A | -1.1084 | |
| 6 | G | A | -1.3542 | |
| 7 | T | A | -1.6046 | |
| 8 | W | A | 0.0000 | |
| 9 | K | A | -2.4496 | |
| 10 | L | A | 0.0000 | |
| 11 | V | A | -0.3098 | |
| 12 | D | A | -1.4729 | |
| 13 | S | A | -1.8170 | |
| 14 | K | A | -2.5736 | |
| 15 | N | A | -2.2326 | |
| 16 | F | A | -1.6086 | |
| 17 | D | A | -2.1256 | |
| 18 | D | A | -2.0394 | |
| 19 | Y | A | 0.0000 | |
| 20 | M | A | 0.0000 | |
| 21 | K | A | -1.7647 | |
| 22 | S | A | -1.0553 | |
| 23 | L | A | -0.9689 | |
| 24 | G | A | -0.8027 | |
| 25 | V | A | -0.7916 | |
| 26 | G | A | -0.0042 | |
| 27 | F | A | 1.1602 | |
| 28 | A | A | 0.6722 | |
| 29 | T | A | 0.3235 | |
| 30 | R | A | -0.2483 | |
| 31 | Q | A | -0.1058 | |
| 32 | V | A | 0.8050 | |
| 33 | A | A | 0.0512 | |
| 34 | S | A | -0.3874 | |
| 35 | M | A | 0.6238 | |
| 36 | T | A | -0.3173 | |
| 37 | K | A | -1.6319 | |
| 38 | P | A | 0.0000 | |
| 39 | T | A | -1.5855 | |
| 40 | T | A | 0.0000 | |
| 41 | I | A | -1.0251 | |
| 42 | I | A | 0.0000 | |
| 43 | E | A | -2.7988 | |
| 44 | K | A | -3.4534 | |
| 45 | N | A | -2.8195 | |
| 46 | G | A | -2.4728 | |
| 47 | D | A | -2.6008 | |
| 48 | I | A | -1.8833 | |
| 49 | L | A | 0.0000 | |
| 50 | T | A | -1.5824 | |
| 51 | L | A | 0.0000 | |
| 52 | K | A | -1.6572 | |
| 53 | T | A | -1.3928 | |
| 54 | H | A | -1.6498 | |
| 55 | S | A | -1.0287 | |
| 56 | T | A | -0.4292 | |
| 57 | F | A | 0.0027 | |
| 58 | K | A | -1.3413 | |
| 59 | N | A | -2.1959 | |
| 60 | T | A | -1.8940 | |
| 61 | E | A | -2.2466 | |
| 62 | I | A | -1.0826 | |
| 63 | S | A | -0.9421 | |
| 64 | F | A | 0.0000 | |
| 65 | K | A | -1.2304 | |
| 66 | L | A | 0.0190 | |
| 67 | G | A | 0.2065 | |
| 68 | V | A | 0.7741 | |
| 69 | E | A | -1.1746 | |
| 70 | F | A | -1.3855 | |
| 71 | D | A | -2.7922 | |
| 72 | E | A | -2.3843 | |
| 73 | T | A | -2.1840 | |
| 74 | T | A | -1.8549 | |
| 75 | A | A | -1.6270 | |
| 76 | D | A | -1.8750 | |
| 77 | D | A | -2.6090 | |
| 78 | R | A | -2.4353 | |
| 79 | K | A | -3.2279 | |
| 80 | V | A | 0.0000 | |
| 81 | K | A | -2.8228 | |
| 82 | S | A | 0.0000 | |
| 83 | I | A | -0.2479 | |
| 84 | V | A | 0.0000 | |
| 85 | T | A | 0.0782 | |
| 86 | L | A | -0.3495 | |
| 87 | D | A | -1.9283 | |
| 88 | G | A | -1.6406 | |
| 89 | G | A | -1.3186 | |
| 90 | K | A | -1.3043 | |
| 91 | L | A | 0.0000 | |
| 92 | V | A | 0.0459 | |
| 93 | H | A | 0.0000 | |
| 94 | L | A | -0.2777 | |
| 95 | Q | A | 0.0000 | |
| 96 | K | A | -2.6861 | |
| 97 | W | A | -2.5299 | |
| 98 | D | A | -2.9071 | |
| 99 | G | A | -2.1895 | |
| 100 | Q | A | -2.5724 | |
| 101 | E | A | -2.8981 | |
| 102 | T | A | 0.0000 | |
| 103 | T | A | 0.0250 | |
| 104 | L | A | 0.4575 | |
| 105 | V | A | 0.1493 | |
| 106 | R | A | 0.0000 | |
| 107 | E | A | -0.6508 | |
| 108 | L | A | -0.1999 | |
| 109 | I | A | -0.0514 | |
| 110 | D | A | -1.6519 | |
| 111 | G | A | -1.7220 | |
| 112 | K | A | -1.7473 | |
| 113 | L | A | 0.0000 | |
| 114 | I | A | -0.3290 | |
| 115 | L | A | 0.0000 | |
| 116 | T | A | 0.3113 | |
| 117 | L | A | 0.0000 | |
| 118 | T | A | 0.1829 | |
| 119 | H | A | -0.6822 | |
| 120 | G | A | -0.6654 | |
| 121 | T | A | -0.0461 | |
| 122 | A | A | -0.1220 | |
| 123 | V | A | 0.7441 | |
| 124 | C | A | 0.0000 | |
| 125 | T | A | -0.5689 | |
| 126 | R | A | 0.0000 | |
| 127 | T | A | -0.6788 | |
| 128 | Y | A | 0.0000 | |
| 129 | E | A | -2.6603 | |
| 130 | K | A | -3.4710 | |
| 131 | E | A | -3.0914 |