Project name: query_structure

Status: done

Started: 2026-03-17 00:51:09
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSSAASGFPVEVWRMEWYRQAPGKEREGVAAIESYGHGTRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYSNVKDDGQLAYHYDYWGQGTQVTVSAG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:41)
Show buried residues

Minimal score value
-3.7781
Maximal score value
1.2757
Average score
-0.841
Total score value
-102.5996

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3552
2 V A -0.5872
3 Q A -0.5468
4 L A 0.0000
5 V A 1.2757
6 E A 0.0000
7 S A -0.5527
8 G A -1.0332
9 G A -0.8107
10 G A -0.0516
11 L A 1.0427
12 V A 0.0481
13 Q A -1.2714
14 A A -1.4650
15 G A -1.3168
16 G A -0.8804
17 S A -1.0464
18 L A -0.8953
19 R A -2.0992
20 L A 0.0000
21 S A -0.3647
22 S A 0.0000
23 A A -0.0406
24 A A 0.0000
25 S A -0.5034
26 G A -0.8751
27 F A -0.4323
28 P A -0.8374
29 V A 0.0000
30 E A -0.8825
31 V A -0.3410
32 W A 0.0000
33 R A -1.2181
34 M A 0.0000
35 E A 0.0000
36 W A 0.0000
37 Y A -0.7328
38 R A -1.4525
39 Q A -2.2602
40 A A -2.0987
41 P A -1.4650
42 G A -2.0047
43 K A -3.4358
44 E A -3.7781
45 R A -3.2315
46 E A -2.1182
47 G A -1.3872
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 E A -1.5137
53 S A 0.0000
54 Y A 0.1512
55 G A -0.8005
56 H A -1.0924
57 G A -1.2172
58 T A -1.4186
59 R A -2.2897
60 Y A -1.7280
61 A A -1.8278
62 D A -2.6530
63 S A -1.7974
64 V A 0.0000
65 K A -2.8277
66 G A -1.7780
67 R A -1.4958
68 F A 0.0000
69 T A -1.0717
70 I A 0.0000
71 S A -0.5601
72 R A -1.1391
73 D A -1.8581
74 N A -1.9533
75 A A -1.6041
76 K A -2.3215
77 N A -1.8510
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.2334
83 M A 0.0000
84 N A -1.4760
85 S A -1.2593
86 L A 0.0000
87 K A -2.2474
88 P A -1.8073
89 E A -2.2683
90 D A 0.0000
91 T A -0.9299
92 A A 0.0000
93 V A -0.7278
94 Y A 0.0000
95 Y A -0.2864
96 S A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.3547
100 D A -1.5393
101 D A -1.7359
102 G A -1.4016
103 Q A -1.3465
104 L A -0.2386
105 A A 0.2764
106 Y A 0.5938
107 H A -0.7314
108 Y A -0.3482
109 D A -1.4821
110 Y A -0.5009
111 W A 0.0508
112 G A 0.0770
113 Q A -0.7157
114 G A -0.4923
115 T A 0.0000
116 Q A -1.0905
117 V A 0.0000
118 T A -0.2521
119 V A 0.0000
120 S A -0.7685
121 A A -0.9587
122 G A -0.7521
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Laboratory of Theory of Biopolymers 2018