| Chain sequence(s) |
H: EVQLVESGGGVVQPGGSLRLSCVASGNIFRSLHMGWYRQAPGKQRELVAIITDTSSTGYTDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCNARLANIYWGQGTTVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VL12H |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.613008 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:16)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:18)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:35)
[INFO] Main: Simulation completed successfully. (00:00:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.2133 | |
| 2 | V | H | -1.3489 | |
| 3 | Q | H | -1.1791 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 1.2206 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.3052 | |
| 8 | G | H | -1.0817 | |
| 9 | G | H | -0.4337 | |
| 11 | G | H | 0.2404 | |
| 12 | L | H | 1.2033 | mutated: VL12H |
| 13 | V | H | 0.0054 | |
| 14 | Q | H | -1.3291 | |
| 15 | P | H | -1.5648 | |
| 16 | G | H | -1.3370 | |
| 17 | G | H | -0.9167 | |
| 18 | S | H | -1.2019 | |
| 19 | L | H | -0.9125 | |
| 20 | R | H | -2.1608 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.1495 | |
| 23 | C | H | 0.0000 | |
| 24 | V | H | 0.9560 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9989 | |
| 27 | G | H | -1.5468 | |
| 28 | N | H | -2.0777 | |
| 29 | I | H | 0.0000 | |
| 30 | F | H | 0.0000 | |
| 35 | R | H | -2.8446 | |
| 36 | S | H | -1.5373 | |
| 37 | L | H | -1.1105 | |
| 38 | H | H | -1.1553 | |
| 39 | M | H | 0.0000 | |
| 40 | G | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | Y | H | 0.2523 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -1.3560 | |
| 45 | A | H | -1.4511 | |
| 46 | P | H | -1.2381 | |
| 47 | G | H | -1.7480 | |
| 48 | K | H | -2.8251 | |
| 49 | Q | H | -2.5847 | |
| 50 | R | H | -1.7630 | |
| 51 | E | H | -1.0743 | |
| 52 | L | H | 0.2427 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | I | H | 0.2533 | |
| 56 | I | H | 0.0000 | |
| 57 | T | H | -1.2394 | |
| 58 | D | H | -2.0160 | |
| 59 | T | H | -1.0639 | |
| 63 | S | H | -1.0115 | |
| 64 | S | H | -0.5928 | |
| 65 | T | H | -0.3221 | |
| 66 | G | H | -0.4100 | |
| 67 | Y | H | -0.7947 | |
| 68 | T | H | -1.2497 | |
| 69 | D | H | -2.5591 | |
| 70 | S | H | -1.8333 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.6639 | |
| 74 | G | H | -1.7463 | |
| 75 | R | H | -1.4974 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.8732 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.3979 | |
| 80 | R | H | -1.2661 | |
| 81 | D | H | -1.5326 | |
| 82 | N | H | -2.2395 | |
| 83 | S | H | -1.7329 | |
| 84 | K | H | -2.1061 | |
| 85 | N | H | -1.8427 | |
| 86 | T | H | 0.0000 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.4014 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.4119 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.3397 | |
| 93 | S | H | -1.1350 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.0939 | |
| 96 | A | H | -1.6149 | |
| 97 | E | H | -2.2001 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.5780 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.1062 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.1902 | |
| 104 | C | H | 0.0000 | |
| 105 | N | H | 0.0000 | |
| 106 | A | H | 0.0000 | |
| 107 | R | H | -0.0225 | |
| 108 | L | H | 0.4870 | |
| 114 | A | H | 0.2036 | |
| 115 | N | H | 0.0013 | |
| 116 | I | H | 1.0535 | |
| 117 | Y | H | 0.4626 | |
| 118 | W | H | 0.6138 | |
| 119 | G | H | 0.0691 | |
| 120 | Q | H | -0.8643 | |
| 121 | G | H | -0.2040 | |
| 122 | T | H | -0.1734 | |
| 123 | T | H | 0.0205 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.0187 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7179 | |
| 128 | S | H | -0.5056 |