Project name: 16abn [mutate: GR16A]

Status: done

Started: 2024-06-18 19:26:14
Settings
Chain sequence(s) A: KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues GR16A
Energy difference between WT (input) and mutated protein (by FoldX) 3.71878 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:21)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:38)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:02)
Show buried residues

Minimal score value
-3.2905
Maximal score value
0.2157
Average score
-1.1525
Total score value
-148.6787

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.4319
2 V A 0.0990
3 F A 0.0000
4 G A -1.0152
5 R A -1.2975
6 C A -1.0679
7 E A -1.1085
8 L A 0.0000
9 A A 0.0000
10 A A -1.2973
11 A A -1.5349
12 M A 0.0000
13 K A -2.3826
14 R A -2.8300
15 H A -2.5868
16 R A -3.2905 mutated: GR16A
17 L A 0.0000
18 D A -2.4014
19 N A -2.3657
20 Y A -1.9710
21 R A -2.3153
22 G A -1.7552
23 Y A -1.1685
24 S A -1.2259
25 L A 0.0000
26 G A 0.0000
27 N A -1.0845
28 W A 0.0000
29 V A 0.0000
30 C A 0.0000
31 A A 0.0000
32 A A 0.0000
33 K A -1.3209
34 F A -0.7569
35 E A -0.7511
36 S A 0.0000
37 N A -1.3925
38 F A 0.0000
39 N A -1.1086
40 T A 0.0000
41 Q A -1.4427
42 A A -1.1647
43 T A -1.3775
44 N A -1.9873
45 R A -2.7858
46 N A -2.2416
47 T A -1.6399
48 D A -2.4435
49 G A -2.0698
50 S A 0.0000
51 T A 0.0000
52 D A -1.3451
53 Y A 0.0000
54 G A 0.0000
55 I A 0.0000
56 L A 0.0000
57 Q A -0.5946
58 I A 0.0000
59 N A -1.2668
60 S A 0.0000
61 R A -2.2664
62 W A -0.8004
63 W A 0.0000
64 C A 0.0000
65 N A -2.6221
66 D A -2.2067
67 G A -1.8021
68 R A -2.2286
69 T A -2.1581
70 P A -1.6471
71 G A -1.3268
72 S A -2.0655
73 R A -2.4726
74 N A -1.7470
75 L A -0.5348
76 C A -0.9811
77 N A -1.4804
78 I A -0.7962
79 P A -1.1412
80 C A 0.0000
81 S A -0.6200
82 A A -0.4660
83 L A 0.0000
84 L A -1.0409
85 S A -1.3468
86 S A -1.5929
87 D A -2.1189
88 I A 0.0000
89 T A -1.2000
90 A A -0.8682
91 S A 0.0000
92 V A 0.0000
93 N A -1.9004
94 C A 0.0000
95 A A 0.0000
96 K A -2.0183
97 K A -2.0321
98 I A 0.0000
99 V A 0.0000
100 S A -2.2278
101 D A -2.7496
102 G A -2.1491
103 N A -2.1397
104 G A -1.9069
105 M A 0.0000
106 N A -1.3381
107 A A -0.6605
108 W A 0.0000
109 V A 0.2157
110 A A -0.9893
111 W A 0.0000
112 R A -3.0429
113 N A -2.9616
114 R A -3.1435
115 C A 0.0000
116 K A -3.1461
117 G A -2.2478
118 T A -2.3869
119 D A -2.4591
120 V A 0.0000
121 Q A -2.0557
122 A A -1.5835
123 W A -1.0722
124 I A -1.0585
125 R A -2.2202
126 G A -1.4008
127 C A -1.2307
128 R A -1.4872
129 L A -0.0342
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018