Project name: 4-5R2

Status: done

Started: 2025-02-21 02:07:04
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Chain sequence(s) A: MTEQQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMASTEGNVTGMFAFAVTNDGVI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:09)
Show buried residues

Minimal score value
-3.6701
Maximal score value
3.0828
Average score
-1.1426
Total score value
-118.8284

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.0364
2 T A -1.0202
3 E A -2.3396
4 Q A -2.3835
5 Q A -1.7909
6 W A -0.7014
7 N A -1.9411
8 F A -1.2008
9 A A -0.7572
10 G A -0.8557
11 I A -0.4660
12 E A -1.6660
13 A A -0.9238
14 A A -0.4466
15 A A -0.9979
16 S A -1.0373
17 A A -0.7811
18 I A -0.7289
19 Q A -1.5432
20 G A -1.3185
21 N A -1.6370
22 V A -0.9570
23 T A -0.7518
24 S A -0.7537
25 I A -0.5216
26 H A -0.9871
27 S A -1.2020
28 L A -0.5280
29 L A -1.7369
30 D A -3.2875
31 E A -3.2691
32 G A -2.5876
33 K A -3.6701
34 Q A -3.2195
35 S A -2.2671
36 L A -1.6049
37 T A -1.5568
38 K A -1.7651
39 L A -0.3032
40 A A -0.4377
41 A A -0.2374
42 A A 0.0152
43 W A -0.1445
44 G A -0.4678
45 G A -0.9720
46 S A -0.9329
47 G A -0.9397
48 S A -1.4984
49 E A -2.2968
50 A A -1.2081
51 Y A -1.1223
52 Q A -2.2644
53 G A -1.8640
54 V A -1.2197
55 Q A -2.3716
56 Q A -2.8164
57 K A -2.7660
58 W A -2.3443
59 D A -3.0321
60 A A -2.1389
61 T A -1.8898
62 A A -1.9612
63 T A -1.8830
64 E A -2.5159
65 L A -1.4739
66 N A -1.8234
67 N A -2.5914
68 A A -1.8146
69 L A -1.8354
70 Q A -2.8117
71 N A -2.5238
72 L A -1.4477
73 A A -1.9422
74 R A -2.9209
75 T A -1.9797
76 I A -1.5320
77 S A -2.1856
78 E A -2.7133
79 A A -1.5745
80 G A -1.6113
81 Q A -1.9390
82 A A -1.1182
83 M A -1.0343
84 A A -1.1354
85 S A -1.0600
86 T A -1.1441
87 E A -1.6432
88 G A -1.1607
89 N A -1.2255
90 V A 0.2699
91 T A 0.4638
92 G A 0.7828
93 M A 2.1232
94 F A 3.0828
95 A A 2.2087
96 F A 2.7105
97 A A 1.6291
98 V A 2.4996
99 T A 1.1474
100 N A -0.7347
101 D A -0.9574
102 G A 0.0717
103 V A 2.1691
104 I A 2.7259
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Laboratory of Theory of Biopolymers 2018