| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYWNNMYWYRQAPGKEREWVAAINSSGKYTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDNGAWWYYYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:35)
[INFO] Main: Simulation completed successfully. (00:01:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4613 | |
| 2 | V | A | -0.7863 | |
| 3 | Q | A | -0.9122 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.9760 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6090 | |
| 8 | G | A | -1.0677 | |
| 9 | G | A | -0.8632 | |
| 10 | G | A | -0.0911 | |
| 11 | L | A | 0.9209 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3552 | |
| 14 | A | A | -1.5916 | |
| 15 | G | A | -1.4959 | |
| 16 | G | A | -1.0529 | |
| 17 | S | A | -1.4693 | |
| 18 | L | A | -1.1166 | |
| 19 | R | A | -2.3209 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4490 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1306 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6554 | |
| 26 | G | A | -0.9582 | |
| 27 | F | A | -0.0178 | |
| 28 | P | A | 0.0593 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | 1.0497 | |
| 31 | W | A | 1.3196 | |
| 32 | N | A | 0.0315 | |
| 33 | N | A | -0.4742 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | 0.0287 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.4662 | |
| 38 | R | A | -1.3898 | |
| 39 | Q | A | -2.3066 | |
| 40 | A | A | -2.1487 | |
| 41 | P | A | -1.4947 | |
| 42 | G | A | -2.0067 | |
| 43 | K | A | -3.4684 | |
| 44 | E | A | -3.7364 | |
| 45 | R | A | -3.0960 | |
| 46 | E | A | -2.0595 | |
| 47 | W | A | -0.6418 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -0.4632 | |
| 53 | S | A | 0.0286 | |
| 54 | S | A | -0.3102 | |
| 55 | G | A | -0.8782 | |
| 56 | K | A | -1.2532 | |
| 57 | Y | A | 0.0425 | |
| 58 | T | A | -0.3715 | |
| 59 | H | A | -1.0742 | |
| 60 | Y | A | -1.3306 | |
| 61 | A | A | -1.5650 | |
| 62 | D | A | -2.5521 | |
| 63 | S | A | -1.7766 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7894 | |
| 66 | G | A | -1.8795 | |
| 67 | R | A | -1.7756 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.1818 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6880 | |
| 72 | R | A | -1.2271 | |
| 73 | D | A | -1.7341 | |
| 74 | N | A | -1.7631 | |
| 75 | A | A | -1.5112 | |
| 76 | K | A | -2.4112 | |
| 77 | N | A | -1.5408 | |
| 78 | T | A | -0.9467 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.7472 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6402 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9853 | |
| 85 | S | A | -1.4626 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.6881 | |
| 88 | P | A | -2.0924 | |
| 89 | E | A | -2.4543 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0693 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7299 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2111 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.2760 | |
| 100 | D | A | -1.0637 | |
| 101 | N | A | -1.7348 | |
| 102 | G | A | -0.4914 | |
| 103 | A | A | 0.7024 | |
| 104 | W | A | 2.0555 | |
| 105 | W | A | 2.6815 | |
| 106 | Y | A | 2.6637 | |
| 107 | Y | A | 1.8448 | |
| 108 | Y | A | 0.9833 | |
| 109 | D | A | -0.5831 | |
| 110 | Y | A | -0.2877 | |
| 111 | W | A | -0.0067 | |
| 112 | G | A | -0.0836 | |
| 113 | Q | A | -0.9461 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2037 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.4039 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.8490 |