Project name: 0210-2

Status: done

Started: 2025-02-10 02:38:59
Settings
Chain sequence(s) A: MITFLPIIFSSLVVVTFVIGNFANGFIALVNSIEWFKRQKISFADQILTALAVSRVGLLWVLLLNWYSTVLNPAFNSVEVRTTAYNIWAVINHFSNWLATTLSIFYLLKIANFSNFIFLHLKRRVKSVILVMLLGPLLFLACHLFVINMNEIVRTKEFEGNMTWKIKLKSAMYFSNMTVTMVANLVPFTLTLLSFMLLICSLCKHLKKMQLHGKGSQDPSTKVHIKALQTVISFLLLCAIYFLSIMISVWSFGSLENKPVFMFCKAIRFSYPSIHPFILIWGNKKLKQTFLSVFWQMRYWVKGEKTSSP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:59)
Show buried residues

Minimal score value
-3.2954
Maximal score value
3.7629
Average score
0.2713
Total score value
83.8453

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 2.6007
2 I A 3.3029
3 T A 2.6062
4 F A 3.7629
5 L A 3.0759
6 P A 2.5970
7 I A 3.1861
8 I A 2.4526
9 F A 2.3652
10 S A 2.2638
11 S A 1.7917
12 L A 2.0324
13 V A 0.0000
14 V A 2.7757
15 V A 3.3595
16 T A 2.5280
17 F A 2.8253
18 V A 3.4094
19 I A 2.9303
20 G A 0.0000
21 N A 1.6326
22 F A 1.8756
23 A A 0.0000
24 N A 0.0000
25 G A 1.1416
26 F A 0.8853
27 I A 0.0000
28 A A 1.1695
29 L A 1.8248
30 V A 0.0000
31 N A 0.0000
32 S A 0.7684
33 I A 0.9032
34 E A -0.8078
35 W A -0.4718
36 F A 0.2865
37 K A -2.0845
38 R A -3.0824
39 Q A -2.4825
40 K A -2.6204
41 I A -0.9757
42 S A -0.3837
43 F A -0.3169
44 A A -0.0668
45 D A -0.3669
46 Q A -0.7246
47 I A 0.0000
48 L A 0.0000
49 T A 0.4437
50 A A 0.5285
51 L A 0.0000
52 A A 0.0000
53 V A 2.1347
54 S A 1.3160
55 R A 0.0000
56 V A 1.4345
57 G A 1.1103
58 L A 0.0000
59 L A 0.0000
60 W A 1.2817
61 V A 0.0000
62 L A 0.0000
63 L A 0.0000
64 L A 1.2427
65 N A 0.5247
66 W A 0.0000
67 Y A 1.3058
68 S A 0.8640
69 T A 0.5188
70 V A 1.0065
71 L A 1.1316
72 N A 0.0946
73 P A 0.1888
74 A A 0.5349
75 F A 1.9434
76 N A 0.7025
77 S A 0.7497
78 V A 0.8349
79 E A -0.6518
80 V A 1.0747
81 R A 0.2523
82 T A -0.0165
83 T A 0.2399
84 A A 0.5720
85 Y A 0.3562
86 N A 0.8597
87 I A 1.2721
88 W A 0.0000
89 A A 0.0000
90 V A 1.2912
91 I A 1.3240
92 N A 0.0000
93 H A 0.0000
94 F A 1.3920
95 S A 0.0000
96 N A 0.3475
97 W A 0.0000
98 L A 0.4638
99 A A 0.0000
100 T A 0.0000
101 T A 0.0000
102 L A 0.0000
103 S A 0.0000
104 I A 0.6328
105 F A 0.0000
106 Y A 0.1252
107 L A 0.0000
108 L A 0.0000
109 K A -1.2126
110 I A 0.2989
111 A A 0.0000
112 N A -1.4697
113 F A 0.0326
114 S A -0.0876
115 N A 0.1543
116 F A 2.2980
117 I A 2.3533
118 F A 0.0000
119 L A 0.2540
120 H A -0.3376
121 L A -0.3589
122 K A -1.7843
123 R A -2.8218
124 R A -3.0751
125 V A -1.9016
126 K A -1.8865
127 S A -0.7611
128 V A -0.0193
129 I A 0.0000
130 L A 1.6153
131 V A 2.5228
132 M A 1.6419
133 L A 2.1253
134 L A 2.8325
135 G A 1.8211
136 P A 0.0000
137 L A 2.4471
138 L A 2.4020
139 F A 2.1108
140 L A 0.0000
141 A A 1.7890
142 C A 1.8685
143 H A 0.0000
144 L A 1.5674
145 F A 2.1967
146 V A 0.0000
147 I A 0.0000
148 N A 0.4249
149 M A 0.7138
150 N A 0.3860
151 E A -0.6440
152 I A -0.3002
153 V A 0.0000
154 R A -1.4261
155 T A -1.5128
156 K A -2.8204
157 E A -3.1421
158 F A -2.1657
159 E A -2.6627
160 G A -1.6838
161 N A -0.9417
162 M A 0.4100
163 T A 0.4182
164 W A 0.3460
165 K A -0.3649
166 I A 0.8799
167 K A -0.5556
168 L A 0.0885
169 K A -0.1303
170 S A 0.2777
171 A A 0.5660
172 M A 0.7178
173 Y A 1.1406
174 F A 2.2181
175 S A 1.1595
176 N A 0.0000
177 M A 1.5477
178 T A 0.9338
179 V A 1.0353
180 T A 0.0000
181 M A 0.8988
182 V A 1.2314
183 A A 0.8981
184 N A 0.0000
185 L A 1.2581
186 V A 1.3524
187 P A 0.0000
188 F A 1.1189
189 T A 1.2360
190 L A 1.5437
191 T A 0.0000
192 L A 1.9021
193 L A 2.4288
194 S A 0.0000
195 F A 0.0000
196 M A 2.1193
197 L A 1.6795
198 L A 0.0000
199 I A 1.0179
200 C A 0.6262
201 S A -0.0622
202 L A 0.0000
203 C A -0.7599
204 K A -2.6758
205 H A -2.5360
206 L A -2.0731
207 K A -3.1550
208 K A -3.2954
209 M A -2.5859
210 Q A -2.5869
211 L A -0.8931
212 H A -1.9193
213 G A -1.8136
214 K A -2.6779
215 G A -1.9343
216 S A -1.9053
217 Q A -2.2870
218 D A -2.0437
219 P A -1.2225
220 S A -0.6295
221 T A 0.0000
222 K A -1.1871
223 V A 0.8576
224 H A 0.3371
225 I A 0.5182
226 K A -0.0276
227 A A 0.3110
228 L A 0.3363
229 Q A -0.4852
230 T A -0.0206
231 V A 0.0000
232 I A 1.0283
233 S A 0.7848
234 F A 0.0000
235 L A 0.0000
236 L A 2.1044
237 L A 1.6596
238 C A 0.0000
239 A A 1.5462
240 I A 2.0523
241 Y A 0.0000
242 F A 0.0000
243 L A 1.8151
244 S A 0.0000
245 I A 0.0000
246 M A 0.0000
247 I A 2.1289
248 S A 0.0000
249 V A 0.0000
250 W A 2.0122
251 S A 1.4887
252 F A 2.0814
253 G A 0.7175
254 S A 0.1338
255 L A 0.3275
256 E A -1.5953
257 N A -1.2264
258 K A -1.2948
259 P A 0.1028
260 V A 0.9494
261 F A 1.0699
262 M A 0.0000
263 F A 1.9353
264 C A 0.0000
265 K A 0.7543
266 A A 0.0000
267 I A 1.1350
268 R A 0.4834
269 F A 0.0000
270 S A 0.8595
271 Y A 0.0000
272 P A 0.0000
273 S A 0.0000
274 I A 1.2942
275 H A 0.0000
276 P A 0.0000
277 F A 1.1491
278 I A 0.6255
279 L A 0.2332
280 I A 0.0000
281 W A -0.1939
282 G A -0.5490
283 N A -1.4822
284 K A -2.5257
285 K A -1.8547
286 L A 0.0000
287 K A -1.8016
288 Q A -1.4382
289 T A -0.3751
290 F A 0.2896
291 L A 0.6677
292 S A 0.5957
293 V A 1.5872
294 F A 1.5613
295 W A 1.5193
296 Q A 0.5735
297 M A 1.4098
298 R A 0.1133
299 Y A 0.0783
300 W A 0.6834
301 V A 0.8784
302 K A -1.5058
303 G A -1.6317
304 E A -2.7867
305 K A -2.5042
306 T A -1.3657
307 S A -1.1408
308 S A -0.7088
309 P A -0.4238
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Laboratory of Theory of Biopolymers 2018