Project name: Pep5-Mut13-KLVFF

Status: done

Started: 2026-02-11 06:43:51
Settings
Chain sequence(s) A: RGDGWKPFVIDAHVLVALHTGIDGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.9252
Maximal score value
2.6381
Average score
0.4681
Total score value
14.0445

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9252
2 G A -1.1047
3 D A -1.7301
4 G A -0.5303
5 W A 0.8653
6 K A -1.2054
7 P A -0.1562
8 F A 2.0040
9 V A 1.3106
10 I A 1.7833
11 D A -1.4089
12 A A -0.4684
13 H A -0.6415
14 V A 1.8785
15 L A 2.2344
16 V A 2.0866
17 A A 0.6840
18 L A 1.3779
19 H A -0.7203
20 T A -0.4406
21 G A 0.0915
22 I A 1.7125
23 D A -1.0372
24 G A -0.1570
25 I A 1.6393
26 K A -1.0399
27 L A 1.5720
28 V A 2.4387
29 F A 2.6381
30 F A 2.2935
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Laboratory of Theory of Biopolymers 2018