| Chain sequence(s) |
A: RGDGWKPFVIDAHVLVALHTGIDGIKLVFF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:02)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.9252 | |
| 2 | G | A | -1.1047 | |
| 3 | D | A | -1.7301 | |
| 4 | G | A | -0.5303 | |
| 5 | W | A | 0.8653 | |
| 6 | K | A | -1.2054 | |
| 7 | P | A | -0.1562 | |
| 8 | F | A | 2.0040 | |
| 9 | V | A | 1.3106 | |
| 10 | I | A | 1.7833 | |
| 11 | D | A | -1.4089 | |
| 12 | A | A | -0.4684 | |
| 13 | H | A | -0.6415 | |
| 14 | V | A | 1.8785 | |
| 15 | L | A | 2.2344 | |
| 16 | V | A | 2.0866 | |
| 17 | A | A | 0.6840 | |
| 18 | L | A | 1.3779 | |
| 19 | H | A | -0.7203 | |
| 20 | T | A | -0.4406 | |
| 21 | G | A | 0.0915 | |
| 22 | I | A | 1.7125 | |
| 23 | D | A | -1.0372 | |
| 24 | G | A | -0.1570 | |
| 25 | I | A | 1.6393 | |
| 26 | K | A | -1.0399 | |
| 27 | L | A | 1.5720 | |
| 28 | V | A | 2.4387 | |
| 29 | F | A | 2.6381 | |
| 30 | F | A | 2.2935 |