Project name: Ttt [mutate: YD55H]

Status: done

Started: 2025-04-13 19:12:20
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Chain sequence(s) H: SEVQLVESGGGLVQPGGSLRLSCAASGFNVYYSSIHWVRQAPGKGLEWVASIYSYYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARNVGYGMDYWGQGTLVTVSSASTKGPSVFPLAPAATAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTYICNVNHKPSNTKVDKKVE
L: SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYIYGLITFGQGTKVEIKRTVAAPSVFIFPPSAKSGTASVVCLLNNFYPREAKVQWAAASQESVTEQDSKDSTYSLSSTLTLYEKHKVYACEVTHQGLSSPVTK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues YD55H
Energy difference between WT (input) and mutated protein (by FoldX) 0.674782 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:13)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:18)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:25)
Show buried residues

Minimal score value
-3.2163
Maximal score value
2.0436
Average score
-0.5362
Total score value
-216.1076

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 S H -1.1958
4 E H -2.0200
5 V H -1.0026
6 Q H -0.8063
7 L H 0.0000
8 V H 0.6785
9 E H 0.0000
10 S H -0.4355
11 G H -0.6896
12 G H -0.3518
13 G H -0.0006
14 L H 0.0326
15 V H 0.0000
16 Q H -1.6641
17 P H -1.9373
18 G H -1.6748
19 G H -1.3370
20 S H -1.3039
21 L H -1.0293
22 R H -1.6271
23 L H 0.0000
24 S H -0.3575
25 C H 0.0000
26 A H -0.1486
27 A H -0.3298
28 S H -0.6766
29 G H -1.0939
30 F H -0.2149
31 N H -0.4118
32 V H 0.0000
33 Y H 1.1157
34 Y H 1.7773
35 S H 0.0000
36 S H 0.0000
37 I H 0.0000
38 H H 0.0000
39 W H 0.0000
40 V H 0.0000
41 R H 0.0000
42 Q H -0.7844
43 A H -1.1508
44 P H -0.9350
45 G H -1.4874
46 K H -2.3575
47 G H -1.6206
48 L H 0.0000
49 E H -1.1930
50 W H 0.0000
51 V H 0.0000
52 A H 0.0000
53 S H 0.0000
54 I H 0.0000
55 D H 0.5107 mutated: YD55H
56 S H 0.9292
57 Y H 2.0436
58 Y H 1.9814
59 G H 0.9265
60 Y H 1.3738
61 T H 0.4947
62 S H -0.0214
63 Y H -0.8687
64 A H -1.3857
65 D H -2.4913
66 S H -1.7808
67 V H 0.0000
68 K H -2.4793
69 G H -1.8329
70 R H -1.8198
71 F H 0.0000
72 T H -0.9457
73 I H 0.0000
74 S H -0.3383
75 A H -0.6665
76 D H -1.3695
77 T H -0.8523
78 S H -1.3648
79 K H -2.2150
80 N H -1.4474
81 T H 0.0000
82 A H 0.0000
83 Y H 0.0000
84 L H 0.0000
85 Q H -1.2770
86 M H 0.0000
87 N H -2.1618
88 S H -1.7136
89 L H 0.0000
90 R H -2.9868
91 A H -2.0426
92 E H -2.4741
93 D H 0.0000
94 T H -0.8138
95 A H 0.0000
96 V H 0.2383
97 Y H 0.0000
98 Y H 0.0000
99 C H 0.0000
100 A H 0.0000
101 R H 0.0000
102 N H 0.3420
103 V H 0.9593
104 G H 0.5129
105 Y H 1.2453
106 G H 0.6163
107 M H 0.0000
108 D H 0.2581
109 Y H 0.1660
110 W H -0.2247
111 G H 0.0000
112 Q H -1.3293
113 G H -0.6194
114 T H -0.0518
115 L H 0.3019
116 V H 0.0000
117 T H 0.0000
118 V H 0.0000
119 S H -1.0348
120 S H -0.6327
121 A H -0.4949
122 S H -0.6713
123 T H -0.9032
124 K H -1.6376
125 G H -1.6512
126 P H -0.7189
127 S H -0.2191
128 V H 0.0000
129 F H -0.1273
130 P H -0.5051
131 L H 0.0000
132 A H -0.6261
133 P H -0.2564
134 A H -0.1075
135 A H 0.0487
142 T H -0.2698
143 A H -0.1798
144 A H 0.0000
145 L H 0.0000
146 G H 0.0000
147 C H 0.0000
148 L H 0.0000
149 V H 0.0000
150 K H 0.0000
151 D H -0.4825
152 Y H 0.0000
153 F H 0.0000
154 P H 0.0000
155 E H -0.5140
156 P H -0.6833
157 V H -0.7874
158 T H -0.7143
159 V H -0.4818
160 S H -0.4947
161 W H 0.0000
162 N H -0.8866
163 S H -0.7537
164 G H -0.6205
165 A H -0.2936
166 L H -0.0015
167 T H -0.1961
168 S H -0.1960
169 G H -0.3324
170 V H 0.1319
171 H H -0.4057
172 T H -0.2055
173 F H 0.0000
174 P H -0.3811
175 A H 0.1558
176 V H 0.3354
177 L H 0.9083
178 Q H 0.1573
179 S H -0.1069
180 S H -0.2452
181 G H -0.0147
182 L H -0.0058
183 Y H 0.2749
184 S H 0.0000
185 L H 0.0000
186 S H 0.0000
187 S H 0.0000
188 V H 0.0000
189 V H 0.0000
190 T H -0.1971
191 V H 0.0000
192 P H -0.2855
193 S H -0.2123
194 S H -0.0874
195 S H 0.2765
196 L H 0.8603
197 G H 0.0213
200 T H -0.3978
201 Y H -0.4487
202 I H -1.0465
203 C H 0.0000
204 N H -1.6700
205 V H 0.0000
206 N H -2.3218
207 H H 0.0000
208 K H -2.8545
209 P H -1.6618
210 S H -2.0030
211 N H -2.7104
212 T H -2.2537
213 K H -2.8865
214 V H -1.7618
215 D H -2.6865
216 K H -2.2388
217 K H -2.2317
218 V H 0.0000
219 E H -1.9136
1 S L -1.3716
2 D L -2.2012
3 I L -1.1140
4 Q L -2.1190
5 M L 0.0000
6 T L -1.3960
7 Q L 0.0000
8 S L -0.9222
9 P L -0.6282
10 S L -0.9594
11 S L -0.9074
12 L L -0.5213
13 S L -0.8938
14 A L 0.0000
15 S L -0.6025
16 V L 0.2107
17 G L -0.7294
18 D L -1.4716
19 R L -2.2013
20 V L 0.0000
21 T L -0.5866
22 I L 0.0000
23 T L -0.8323
24 C L 0.0000
25 R L -2.4950
26 A L 0.0000
27 S L -1.2471
28 Q L -0.5793
29 S L 0.1376
30 V L 1.6702
31 S L 0.0000
32 S L 0.1861
33 A L 0.4611
34 V L 0.0000
35 A L 0.0000
36 W L 0.0000
37 Y L 0.0000
38 Q L 0.0000
39 Q L 0.0000
40 K L -1.6816
41 P L -1.5743
42 G L -1.6490
43 K L -2.5188
44 A L -1.4631
45 P L 0.0000
46 K L -0.9877
47 L L 0.0000
48 L L 0.0000
49 I L 0.0000
50 Y L 0.5202
51 S L 0.1397
52 A L 0.0000
53 S L -0.3192
54 S L 0.3146
55 L L 0.6026
56 Y L 0.4549
57 S L -0.0145
58 G L -0.3862
59 V L -0.1551
60 P L -0.3315
61 S L -0.4030
62 R L -0.7779
63 F L 0.0000
64 S L -0.2468
65 G L -0.3701
66 S L -0.8751
67 R L -1.4972
68 S L -1.2196
69 G L -1.0573
70 T L -1.1534
71 D L -1.6997
72 F L 0.0000
73 T L -0.7853
74 L L 0.0000
75 T L -0.6054
76 I L 0.0000
77 S L -1.3059
78 S L -1.1295
79 L L 0.0000
80 Q L -0.9619
81 P L -1.1953
82 E L -1.9288
83 D L 0.0000
84 F L -0.6778
85 A L 0.0000
86 T L -1.0128
87 Y L 0.0000
88 Y L 0.0000
89 C L 0.0000
90 Q L 0.0000
91 Q L 0.0000
92 Y L 1.2470
93 I L 0.0000
94 Y L 1.7421
95 G L 0.9909
96 L L 0.9652
97 I L 0.0000
98 T L -0.2810
99 F L 0.0000
100 G L 0.0000
101 Q L -1.8538
102 G L 0.0000
103 T L 0.0000
104 K L -1.8747
105 V L 0.0000
106 E L -1.3317
107 I L -0.6858
108 K L -1.6070
109 R L -1.2987
110 T L -0.1657
111 V L 0.3990
112 A L 0.1809
113 A L -0.1228
114 P L 0.0000
115 S L -0.2232
116 V L 0.0000
117 F L -0.0335
118 I L 0.0504
119 F L 0.0000
120 P L -0.2420
121 P L -0.4484
122 S L -0.5420
126 A L -0.8870
127 K L -1.9207
128 S L -1.2779
129 G L -0.8833
130 T L -0.3456
131 A L -0.1176
132 S L 0.1498
133 V L 0.0000
134 V L 0.0000
135 C L 0.0000
136 L L 0.0000
137 L L 0.0000
138 N L -0.4450
139 N L -1.0488
140 F L 0.0000
141 Y L -1.1285
142 P L -1.7412
143 R L -3.0957
144 E L -3.2163
145 A L -2.2495
146 K L -2.3019
147 V L -1.3404
148 Q L -1.3296
149 W L -0.3773
157 A L -0.0289
158 A L 0.0390
159 A L 0.2710
160 S L -0.5544
161 Q L -1.2608
162 E L -1.9519
163 S L -0.8503
164 V L -0.8457
165 T L -1.2327
166 E L -2.3358
167 Q L -1.9310
168 D L -1.9541
169 S L -1.8998
170 K L -2.2526
171 D L -1.7298
172 S L 0.0000
173 T L 0.0000
174 Y L 0.0000
175 S L 0.0000
176 L L 0.0000
177 S L 0.0000
178 S L 0.0000
179 T L -0.3420
180 L L 0.0560
181 T L 0.6670
182 L L 1.4655
187 Y L -0.2753
188 E L -2.4362
189 K L -3.0490
190 H L -2.7077
191 K L -2.5176
192 V L -1.4757
193 Y L -1.3081
194 A L -0.8114
195 C L 0.0000
196 E L -1.1640
197 V L 0.0000
198 T L -1.2231
199 H L 0.0000
200 Q L -1.5297
201 G L -0.3788
202 L L -0.2519
203 S L -0.4807
204 S L -0.4408
205 P L -0.6234
206 V L -0.2171
207 T L -0.8959
208 K L -1.4476
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Laboratory of Theory of Biopolymers 2018