Project name: ccbb1afa56b3f16

Status: done

Started: 2025-06-02 11:47:36
Settings
Chain sequence(s) A: MSLLIIGMGGTIASVKGESGYESALSIEEIIEISGIREKIGSSIDTIDLMNVDSTLIQPSDWKTLAEEIERNIWDYDGIVITHGTDTMAYTASMLSFMLRNPPVPIVFTGSMLPASEKNSDAPLNLYTALKFAETGIRGIYIAFNGKVMLGVRASKVRSMNFDAFESINYPLIAKLEDDIKILHIPRIYGDEFSSDFRYNHKVLVLKLIPGLSGDVFEAALKIGYRGIVIEGYGVGGIPYRGTNLFEVISKISREIPIVLTTQALYDGVDLERYKVGRMALNAGIIPAGDMTKEATVTKLMWILGHTRKIEEVRELMGKNLAGELTRVF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:39)
Show buried residues

Minimal score value
-3.6457
Maximal score value
1.5485
Average score
-0.6196
Total score value
-203.8431

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3821
2 S A -0.6058
3 L A 0.0000
4 L A 0.0000
5 I A 0.0000
6 I A 0.0000
7 G A 0.0000
8 M A 0.0000
9 G A 0.0000
10 G A 0.0000
11 T A -0.3100
12 I A 0.0000
13 A A 0.0000
14 S A 0.0000
15 V A -0.8168
16 K A -2.0906
17 G A -1.9494
18 E A -2.3941
19 S A -1.5309
20 G A -1.1596
21 Y A -0.8682
22 E A -2.1598
23 S A -1.1324
24 A A -0.6980
25 L A -0.7392
26 S A -0.9881
27 I A 0.0000
28 E A -2.1409
29 E A -1.8991
30 I A 0.0000
31 I A 0.0000
32 E A -2.3158
33 I A -0.2208
34 S A 0.0000
35 G A -1.4716
36 I A 0.0000
37 R A -2.8274
38 E A -3.2157
39 K A -2.5218
40 I A 0.0000
41 G A -1.2226
42 S A -0.8559
43 S A -0.5360
44 I A 0.0000
45 D A -1.3801
46 T A -0.8966
47 I A -0.4745
48 D A -1.2139
49 L A -0.3065
50 M A -0.4415
51 N A -1.0892
52 V A -0.4712
53 D A -1.2879
54 S A 0.0000
55 T A -0.3427
56 L A 0.6415
57 I A 0.0000
58 Q A -1.1660
59 P A -1.1551
60 S A -1.0478
61 D A -0.8709
62 W A 0.0000
63 K A -1.5860
64 T A -0.8577
65 L A 0.0000
66 A A 0.0000
67 E A -1.8665
68 E A -1.4526
69 I A 0.0000
70 E A -1.8552
71 R A -2.5333
72 N A -1.6904
73 I A 0.0000
74 W A -0.2701
75 D A -1.7534
76 Y A -0.8941
77 D A -1.0244
78 G A 0.0000
79 I A 0.0000
80 V A 0.0000
81 I A 0.0000
82 T A 0.0000
83 H A 0.0000
84 G A 0.0000
85 T A 0.0000
86 D A -1.9729
87 T A -0.9452
88 M A 0.0000
89 A A 0.0000
90 Y A -0.1536
91 T A 0.0000
92 A A 0.0000
93 S A 0.0000
94 M A 0.0000
95 L A 0.0000
96 S A 0.0000
97 F A 0.0000
98 M A 0.0000
99 L A 0.0000
100 R A -0.9011
101 N A -1.1401
102 P A 0.0000
103 P A -0.6690
104 V A -0.2194
105 P A 0.0000
106 I A 0.0000
107 V A 0.0000
108 F A 0.0000
109 T A 0.0000
110 G A 0.0000
111 S A 0.0000
112 M A 0.2396
113 L A 0.1628
114 P A 0.0000
115 A A 0.0000
116 S A -0.9351
117 E A -1.8016
118 K A -2.6293
119 N A -2.2353
120 S A -1.0605
121 D A 0.0000
122 A A 0.0000
123 P A 0.1651
124 L A 0.6990
125 N A 0.0000
126 L A 0.0000
127 Y A 0.1389
128 T A 0.0000
129 A A 0.0000
130 L A 0.0000
131 K A -0.7324
132 F A 0.0000
133 A A 0.0000
134 E A -0.5805
135 T A -0.5246
136 G A -0.6452
137 I A 0.0172
138 R A -0.3428
139 G A 0.0000
140 I A 0.0000
141 Y A 0.0000
142 I A 0.0000
143 A A 0.0000
144 F A 0.0000
145 N A -0.5166
146 G A -0.7825
147 K A -0.9055
148 V A 0.0000
149 M A 0.0000
150 L A 0.0000
151 G A 0.0000
152 V A 0.0000
153 R A 0.0000
154 A A 0.0000
155 S A 0.0000
156 K A -0.8460
157 V A -0.1480
158 R A -1.0776
159 S A -0.6070
160 M A 0.3720
161 N A -0.7013
162 F A -0.0219
163 D A -0.7157
164 A A 0.0000
165 F A 0.0000
166 E A -0.4754
167 S A 0.0000
168 I A 0.0000
169 N A -0.3697
170 Y A -0.0016
171 P A 0.0930
172 L A 0.2925
173 I A 0.0000
174 A A 0.0000
175 K A -1.5775
176 L A -2.0451
177 E A -3.5247
178 D A -3.5724
179 D A -3.2764
180 I A -1.8920
181 K A -1.7715
182 I A 0.5850
183 L A 1.0171
184 H A 0.6701
185 I A 1.0225
186 P A 0.0000
187 R A -1.3452
188 I A -0.3326
189 Y A -1.0683
190 G A -1.8083
191 D A -2.8040
192 E A -2.7415
193 F A -1.3693
194 S A -0.9853
195 S A -0.7023
196 D A -1.0361
197 F A -1.1159
198 R A -1.9727
199 Y A -1.3099
200 N A -1.3138
201 H A -1.5275
202 K A -0.9043
203 V A 0.0000
204 L A 0.2896
205 V A 0.2283
206 L A -0.1589
207 K A -1.2056
208 L A 0.0000
209 I A 0.6425
210 P A 0.0753
211 G A -0.5734
212 L A -0.3187
213 S A -0.8428
214 G A 0.0000
215 D A -2.0943
216 V A -0.8394
217 F A 0.0000
218 E A -1.9149
219 A A -0.8211
220 A A 0.0000
221 L A -0.4740
222 K A -0.8238
223 I A 1.0498
224 G A 0.3483
225 Y A -0.1018
226 R A -0.7534
227 G A 0.0000
228 I A 0.0000
229 V A 0.0000
230 I A 0.0000
231 E A -0.7703
232 G A 0.0000
233 Y A 0.2937
234 G A -0.1858
235 V A -0.5648
236 G A -0.4920
237 G A -0.3961
238 I A 0.0000
239 P A -0.4697
240 Y A -0.9689
241 R A -2.0173
242 G A -1.5262
243 T A -1.4235
244 N A -2.0088
245 L A 0.0000
246 F A -1.1827
247 E A -2.3343
248 V A 0.0000
249 I A 0.0000
250 S A -2.1086
251 K A -3.1519
252 I A 0.0000
253 S A 0.0000
254 R A -3.5552
255 E A -3.3160
256 I A 0.0000
257 P A 0.0000
258 I A 0.0000
259 V A 0.0000
260 L A 0.0000
261 T A 0.0000
262 T A 0.0000
263 Q A -0.3568
264 A A 0.2656
265 L A 0.8566
266 Y A 0.5744
267 D A -1.2393
268 G A 0.0000
269 V A 0.0000
270 D A -1.8904
271 L A 0.0000
272 E A -3.0504
273 R A -2.8475
274 Y A -1.2271
275 K A -2.0333
276 V A -0.8628
277 G A 0.0000
278 R A -2.9508
279 M A -1.1893
280 A A 0.0000
281 L A -1.2451
282 N A -1.4606
283 A A 0.0000
284 G A -1.3937
285 I A 0.0000
286 I A 0.0000
287 P A 0.0000
288 A A 0.0000
289 G A 0.0000
290 D A 0.0000
291 M A 0.0000
292 T A 0.0000
293 K A -0.4658
294 E A 0.0000
295 A A 0.0000
296 T A 0.0000
297 V A 0.0000
298 T A 0.0000
299 K A 0.0000
300 L A 0.0000
301 M A 0.0000
302 W A 0.0000
303 I A 0.0000
304 L A 0.0000
305 G A -1.2069
306 H A -1.2847
307 T A -1.4524
308 R A -2.2877
309 K A -3.3179
310 I A -3.0162
311 E A -3.6457
312 E A -3.2544
313 V A 0.0000
314 R A -2.4937
315 E A -2.7351
316 L A -1.8129
317 M A 0.0000
318 G A 0.0000
319 K A -1.6173
320 N A -0.7523
321 L A -0.3915
322 A A 0.0000
323 G A 0.0000
324 E A 0.0000
325 L A 0.0000
326 T A -0.0638
327 R A 0.1953
328 V A 1.5485
329 F A 1.4823
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018