Project name: S1A2_baseline_Aggrescan3D

Status: done

Started: 2025-11-30 06:21:14
Settings
Chain sequence(s) B: SAEEEAEKSRGGGGGVGGGGGGGGGLGGGGGGGGGGGAGG
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:06)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:06)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:06)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:06)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:06)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-4.5606
Maximal score value
0.8281
Average score
-1.7142
Total score value
-68.5692

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S B -1.8900
2 A B -2.3064
3 E B -3.8720
4 E B -4.1945
5 E B -4.0370
6 A B -3.6684
7 E B -4.5606
8 K B -4.0780
9 S B -2.8610
10 R B -3.3797
11 G B -2.7920
12 G B -1.9057
13 G B -1.7747
14 G B -1.3044
15 G B -0.5210
16 V B 0.8281
17 G B -0.5585
18 G B -2.0633
19 G B -1.8981
20 G B -2.2904
21 G B -2.2553
22 G B -1.4873
23 G B -1.0772
24 G B -0.7972
25 G B -0.3257
26 L B 0.6834
27 G B -0.3502
28 G B -0.7625
29 G B -1.0169
30 G B -1.2929
31 G B -1.3331
32 G B -1.3015
33 G B -1.3034
34 G B -1.3608
35 G B -1.2403
36 G B -1.2692
37 G B -1.1494
38 A B -0.6261
39 G B -0.6695
40 G B -0.5065
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Laboratory of Theory of Biopolymers 2018