| Chain sequence(s) |
A: QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYGMGWFRQAPGQGLEAVAATSSGGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASGLAGEMTETSSSDYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:44)
[INFO] Main: Simulation completed successfully. (00:00:44)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5148 | |
| 2 | V | A | -0.9402 | |
| 3 | Q | A | -1.0208 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1489 | |
| 6 | E | A | 0.4043 | |
| 7 | S | A | -0.1264 | |
| 8 | G | A | -0.7260 | |
| 9 | G | A | 0.1005 | |
| 10 | G | A | 0.6996 | |
| 11 | L | A | 1.4211 | |
| 12 | V | A | -0.0836 | |
| 13 | Q | A | -1.4468 | |
| 14 | P | A | -1.8514 | |
| 15 | G | A | -1.5710 | |
| 16 | G | A | -1.0598 | |
| 17 | S | A | -1.3170 | |
| 18 | L | A | -0.9076 | |
| 19 | R | A | -2.1403 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4047 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1402 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.9058 | |
| 26 | G | A | -1.0315 | |
| 27 | F | A | -0.3574 | |
| 28 | T | A | -0.2163 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.7182 | |
| 31 | S | A | -0.2645 | |
| 32 | Y | A | 0.2113 | |
| 33 | G | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.2800 | |
| 38 | R | A | -0.0651 | |
| 39 | Q | A | -0.4946 | |
| 40 | A | A | -0.9080 | |
| 41 | P | A | -0.9960 | |
| 42 | G | A | -1.2180 | |
| 43 | Q | A | -1.7065 | |
| 44 | G | A | -0.9309 | |
| 45 | L | A | 0.2387 | |
| 46 | E | A | -0.4863 | |
| 47 | A | A | 0.1152 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.4371 | |
| 51 | T | A | 0.0000 | |
| 52 | S | A | -0.5975 | |
| 53 | S | A | -0.6388 | |
| 54 | G | A | -1.0477 | |
| 55 | G | A | -1.0477 | |
| 56 | G | A | -0.8711 | |
| 57 | S | A | -0.4472 | |
| 58 | T | A | 0.2645 | |
| 59 | Y | A | 0.8752 | |
| 60 | Y | A | -0.2051 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.3438 | |
| 63 | S | A | -1.7603 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4517 | |
| 66 | G | A | -1.7519 | |
| 67 | R | A | -1.5248 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7068 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.5461 | |
| 72 | R | A | -1.2940 | |
| 73 | D | A | -1.9863 | |
| 74 | N | A | -2.0996 | |
| 75 | S | A | -1.7599 | |
| 76 | K | A | -2.5191 | |
| 77 | N | A | -1.8766 | |
| 78 | T | A | 0.0000 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.6628 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2902 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.5467 | |
| 85 | S | A | -1.4254 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.9324 | |
| 88 | A | A | -2.0232 | |
| 89 | E | A | -2.4660 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.5196 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.8512 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.4823 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | S | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | L | A | -0.2705 | |
| 101 | A | A | -0.8286 | |
| 102 | G | A | -1.0380 | |
| 103 | E | A | -1.7879 | |
| 104 | M | A | -0.3872 | |
| 105 | T | A | -1.1603 | |
| 106 | E | A | -1.9498 | |
| 107 | T | A | -1.1377 | |
| 108 | S | A | -1.0622 | |
| 109 | S | A | -0.9573 | |
| 110 | S | A | -0.9782 | |
| 111 | D | A | -1.5488 | |
| 112 | Y | A | -0.4126 | |
| 113 | W | A | 0.0794 | |
| 114 | G | A | -0.1360 | |
| 115 | Q | A | -0.8116 | |
| 116 | G | A | 0.1352 | |
| 117 | T | A | 0.6044 | |
| 118 | L | A | 1.6986 | |
| 119 | V | A | 0.0000 | |
| 120 | T | A | 0.3352 | |
| 121 | V | A | 0.0000 | |
| 122 | S | A | -0.7399 | |
| 123 | S | A | -0.4740 |