Project name: ECD_215_1st

Status: done

Started: 2024-06-19 14:57:53
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVEMLENIMLLSGCTLEESKIKKVLKKPKYIDLALEAQFTIMPKTALELAKVFRLKNIEALAILVCGCSPTGNLSNLYSLQLKGDLNLSWVMTTCSTKCANEHMPELLEKYSRGIYDGDLKDKVPYKGIEISLELVTKPCTKGIELKSKRPQLLRKETKELKEKVEELTKEVTKLSKENVGKSIMFAMTPKILRTSSLMPRLGYKLGLEKSKAACLNGRCRRTVSVETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMQSQREEGEKLVKEYKEEEKKKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:02)
Show buried residues

Minimal score value
-5.7114
Maximal score value
1.7253
Average score
-1.1648
Total score value
-351.7563

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.8161
2 F A 0.3184
3 T A -0.1110
4 L A -0.1185
5 P A -0.2428
6 P A -1.0589
7 N A -2.0616
8 F A -1.2607
9 G A -1.4526
10 K A -2.1920
11 R A -1.6040
12 P A -0.9157
13 T A -0.7151
14 D A -0.7434
15 L A 0.5148
16 E A -0.2730
17 L A -0.2246
18 S A 0.8546
19 V A 1.7253
20 K A 0.1819
21 L A 0.5593
22 V A 1.1478
23 E A -0.2321
24 M A -0.7156
25 L A 0.0000
26 E A -1.2759
27 N A 0.0000
28 I A 0.0000
29 M A 0.0000
30 L A -0.7011
31 L A -0.8255
32 S A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.5692
36 L A 0.0000
37 E A -3.1910
38 E A -3.5343
39 S A -2.8240
40 K A -3.0371
41 I A 0.0000
42 K A -3.6926
43 K A -3.6042
44 V A 0.0000
45 L A -1.4732
46 K A -2.8990
47 K A -2.6074
48 P A -1.6246
49 K A -1.5478
50 Y A -1.0058
51 I A -0.9623
52 D A -2.0969
53 L A 0.0000
54 A A 0.0000
55 L A -0.5335
56 E A -1.2693
57 A A 0.0000
58 Q A 0.0000
59 F A -0.1823
60 T A -0.4925
61 I A 0.0000
62 M A 0.0000
63 P A 0.0000
64 K A -1.4201
65 T A 0.0000
66 A A 0.0000
67 L A -1.2031
68 E A -2.2822
69 L A 0.0000
70 A A 0.0000
71 K A -2.1779
72 V A 0.0080
73 F A -1.1487
74 R A -2.5634
75 L A -1.9636
76 K A -2.6873
77 N A -2.0073
78 I A -0.4619
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A 0.0000
94 L A 0.2584
95 S A 0.0000
96 N A 0.0000
97 L A 0.3127
98 Y A 0.0000
99 S A 0.0000
100 L A -0.4733
101 Q A -1.1863
102 L A 0.0000
103 K A -2.3716
104 G A 0.0000
105 D A 0.0000
106 L A 0.0000
107 N A -1.2011
108 L A 0.0000
109 S A 0.0000
110 W A 0.1015
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A -0.3923
115 C A -0.1789
116 S A 0.0000
117 T A 0.0000
118 K A -2.0401
119 C A -1.2978
120 A A 0.0000
121 N A -2.1385
122 E A -2.7079
123 H A -2.2237
124 M A 0.0000
125 P A -2.8359
126 E A -3.1935
127 L A 0.0000
128 L A 0.0000
129 E A -3.7117
130 K A -2.7531
131 Y A -1.6394
132 S A 0.0000
133 R A -2.9831
134 G A -1.7328
135 I A -1.2827
136 Y A -1.6381
137 D A -2.6051
138 G A -2.2336
139 D A -3.4781
140 L A 0.0000
141 K A -3.3793
142 D A -2.7722
143 K A -1.6944
144 V A -0.7055
145 P A -0.5173
146 Y A -0.2331
147 K A -0.9891
148 G A -0.5084
149 I A 0.0000
150 E A -1.6105
151 I A 0.4676
152 S A -0.1388
153 L A -1.2138
154 E A -1.8898
155 L A -0.8298
156 V A 0.0000
157 T A -1.4094
158 K A -2.7150
159 P A 0.0000
160 C A 0.0000
161 T A -1.8598
162 K A -2.4601
163 G A 0.0000
164 I A -2.1026
165 E A -2.6312
166 L A -2.2850
167 K A -2.5628
168 S A -2.7570
169 K A -3.0785
170 R A -2.9500
171 P A -2.4801
172 Q A -2.3280
173 L A -1.5767
174 L A -2.3773
175 R A -3.5552
176 K A -3.8450
177 E A -3.5313
178 T A -3.4191
179 K A -4.9969
180 E A -5.1408
181 L A 0.0000
182 K A -4.8071
183 E A -5.2502
184 K A -4.4329
185 V A 0.0000
186 E A -4.7428
187 E A -4.4953
188 L A 0.0000
189 T A -2.9472
190 K A -3.7694
191 E A -3.4573
192 V A 0.0000
193 T A -2.6792
194 K A -3.4618
195 L A -2.6729
196 S A -2.2780
197 K A -3.4866
198 E A -3.2687
199 N A 0.0000
200 V A -1.2946
201 G A -1.8602
202 K A -1.8175
203 S A -0.1696
204 I A 0.0000
205 M A 0.7269
206 F A 1.6876
207 A A 0.8233
208 M A 0.0000
209 T A -0.1127
210 P A -0.6278
211 K A -1.2887
212 I A 0.0000
213 L A -0.5914
214 R A -1.7954
215 T A 0.0000
216 S A 0.0000
217 S A -1.1603
218 L A -0.6843
219 M A 0.0000
220 P A 0.0000
221 R A -1.8809
222 L A -0.5795
223 G A 0.0000
224 Y A 0.0000
225 K A -1.3907
226 L A -0.8902
227 G A 0.0000
228 L A -1.1103
229 E A -2.0423
230 K A -1.7488
231 S A 0.0000
232 K A -1.8482
233 A A -0.8928
234 A A -0.6634
235 C A -0.3313
236 L A 0.0000
237 N A -2.2001
238 G A -2.2957
239 R A -3.0622
240 C A 0.0000
241 R A -2.0894
242 R A -1.5063
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 V A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.6080
255 L A 0.0000
256 C A 0.0000
257 S A -0.3771
258 T A -0.4315
259 I A 0.0000
260 L A 0.0000
261 N A -0.9578
262 V A -0.0249
263 A A 0.0000
264 F A 0.0000
265 P A -0.4876
266 P A -0.8228
267 E A -1.1948
268 V A 0.5144
269 I A 0.0000
270 G A -0.1706
271 P A 0.3958
272 L A 0.0000
273 F A 0.1218
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.1446
278 L A 0.0000
279 Y A 0.0000
280 M A -0.5123
281 Q A -1.4089
282 S A -1.6654
283 Q A 0.0000
284 R A -2.0856
285 E A -3.0885
286 E A -2.8407
287 G A 0.0000
288 E A -2.9098
289 K A -3.3430
290 L A -2.6143
291 V A 0.0000
292 K A -4.0767
293 E A -4.3365
294 Y A -3.8887
295 K A -4.8945
296 E A -5.6236
297 E A -5.7114
298 E A -5.3890
299 K A -5.5748
300 K A -5.3836
301 K A -4.8935
302 E A -4.1760
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Laboratory of Theory of Biopolymers 2018