| Chain sequence(s) |
H: EVQLQQSGPELVKPGASVKISCKASGYTFTDYYINWVKQKPGQGLEWIGWIYPGSGNSKYNEKFKGKATLTVDTSSSTAYMQLSSLTSEDTAVYFCARGTGIFAYWGQGTLVTVSS
L: DAVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGFYFCSQSTHVPLTFGAGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:31)
[INFO] Main: Simulation completed successfully. (00:02:33)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.1359 | |
| 2 | V | H | -1.3229 | |
| 3 | Q | H | -2.0863 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.7365 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.8561 | |
| 8 | G | H | -0.6203 | |
| 9 | P | H | 0.0586 | |
| 11 | E | H | 0.0419 | |
| 12 | L | H | 1.0799 | |
| 13 | V | H | -0.1705 | |
| 14 | K | H | -1.7129 | |
| 15 | P | H | -1.4065 | |
| 16 | G | H | -1.1067 | |
| 17 | A | H | -0.8590 | |
| 18 | S | H | -0.9594 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.5120 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.6457 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.2298 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.1892 | |
| 27 | G | H | -1.2495 | |
| 28 | Y | H | -0.7197 | |
| 29 | T | H | -0.5777 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.8821 | |
| 36 | D | H | -1.6069 | |
| 37 | Y | H | -0.3027 | |
| 38 | Y | H | 0.2234 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8636 | |
| 45 | K | H | -1.3881 | |
| 46 | P | H | -0.9479 | |
| 47 | G | H | -1.3421 | |
| 48 | Q | H | -1.8739 | |
| 49 | G | H | -1.0893 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.2894 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | -0.0282 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | -0.3751 | |
| 58 | P | H | 0.0000 | |
| 59 | G | H | -0.9941 | |
| 62 | S | H | -1.0172 | |
| 63 | G | H | -0.9368 | |
| 64 | N | H | -1.5231 | |
| 65 | S | H | -0.8995 | |
| 66 | K | H | -1.2538 | |
| 67 | Y | H | -1.3224 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -3.1922 | |
| 70 | K | H | -3.2454 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.2225 | |
| 74 | G | H | -1.9970 | |
| 75 | K | H | -1.7199 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8149 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2801 | |
| 80 | V | H | -0.2112 | |
| 81 | D | H | -0.5794 | |
| 82 | T | H | -0.5203 | |
| 83 | S | H | -0.4305 | |
| 84 | S | H | -0.4989 | |
| 85 | S | H | -0.4734 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.2783 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.1499 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.8186 | |
| 93 | S | H | -0.8475 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2988 | |
| 96 | S | H | -1.4158 | |
| 97 | E | H | -2.0091 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.4299 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.2980 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.1265 | |
| 107 | G | H | 0.0000 | |
| 108 | T | H | -0.0687 | |
| 109 | G | H | -0.1496 | |
| 114 | I | H | 0.2461 | |
| 115 | F | H | 0.0000 | |
| 116 | A | H | -0.0034 | |
| 117 | Y | H | -0.4320 | |
| 118 | W | H | -0.7231 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.6165 | |
| 121 | G | H | -0.7030 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.7558 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.1382 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5699 | |
| 128 | S | H | -0.7966 | |
| 1 | D | L | -1.1310 | |
| 2 | A | L | 0.0000 | |
| 3 | V | L | 0.7917 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.2018 | |
| 6 | Q | L | 0.0000 | |
| 7 | T | L | 0.0397 | |
| 8 | P | L | 0.4482 | |
| 9 | L | L | 1.3263 | |
| 10 | S | L | 0.3546 | |
| 11 | L | L | 0.0934 | |
| 12 | P | L | -0.4996 | |
| 13 | V | L | 0.0000 | |
| 14 | S | L | -0.2266 | |
| 15 | L | L | 0.5232 | |
| 16 | G | L | -1.0017 | |
| 17 | D | L | -1.4607 | |
| 18 | Q | L | -2.1982 | |
| 19 | A | L | 0.0000 | |
| 20 | S | L | -0.8674 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.7116 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.1996 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.8676 | |
| 27 | Q | L | -1.2576 | |
| 28 | S | L | -0.6641 | |
| 29 | L | L | 0.0000 | |
| 30 | V | L | 0.4814 | |
| 31 | H | L | -0.5140 | |
| 32 | S | L | -0.8876 | |
| 34 | N | L | -1.6246 | |
| 35 | G | L | -1.0908 | |
| 36 | N | L | -0.9235 | |
| 37 | T | L | -0.2158 | |
| 38 | Y | L | 0.0451 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | L | L | 0.0000 | |
| 44 | Q | L | -0.8044 | |
| 45 | K | L | -1.2180 | |
| 46 | P | L | -0.7296 | |
| 47 | G | L | -1.1688 | |
| 48 | Q | L | -1.5987 | |
| 49 | S | L | -1.2415 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.7581 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.2361 | |
| 56 | K | L | -0.5738 | |
| 57 | V | L | -0.6492 | |
| 65 | S | L | -0.8029 | |
| 66 | N | L | -1.1360 | |
| 67 | R | L | -1.5120 | |
| 68 | F | L | -0.4786 | |
| 69 | S | L | -0.4853 | |
| 70 | G | L | -0.7560 | |
| 71 | V | L | -0.7959 | |
| 72 | P | L | -1.2058 | |
| 74 | D | L | -2.1720 | |
| 75 | R | L | -2.0183 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.3069 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.8332 | |
| 80 | G | L | -1.0308 | |
| 83 | S | L | -0.6418 | |
| 84 | G | L | -0.5730 | |
| 85 | T | L | -1.3034 | |
| 86 | D | L | -1.8917 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.9130 | |
| 89 | L | L | 0.0000 | |
| 90 | K | L | -1.6096 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -2.2893 | |
| 93 | R | L | -2.3883 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.0085 | |
| 96 | A | L | -0.4492 | |
| 97 | E | L | -1.8771 | |
| 98 | D | L | 0.0000 | |
| 99 | L | L | -0.2756 | |
| 100 | G | L | 0.0000 | |
| 101 | F | L | 0.5687 | |
| 102 | Y | L | 0.0000 | |
| 103 | F | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | S | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.4140 | |
| 108 | T | L | 0.0726 | |
| 109 | H | L | 0.2686 | |
| 114 | V | L | 1.0019 | |
| 115 | P | L | -0.1504 | |
| 116 | L | L | 0.4764 | |
| 117 | T | L | 0.2334 | |
| 118 | F | L | 0.2908 | |
| 119 | G | L | 0.0000 | |
| 120 | A | L | 0.2896 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.1073 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | 0.0462 | |
| 126 | L | L | 0.8002 | |
| 127 | K | L | -0.8929 |