| Chain sequence(s) |
H: QVQLQQSGPELVKPGALVKISCKTSGFTFTRYDINWVKLRPGQGLEWIGWIYPGDGSTNYNEKFKGKATLTADKSSSTAYMQLSSLTSENSAVYFCARQHYGYGDGAFVYWGQGTLVTVSA
L: DIVMSQSPSSLAVSVGEKVSVSCKSSQSLLHSSNQQNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVRAEDLAVYYCQQYYRYPRTFGGGTKLEMK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:26)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4161 | |
| 2 | V | H | -0.7520 | |
| 3 | Q | H | -1.5896 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0515 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.8695 | |
| 8 | G | H | -0.6412 | |
| 9 | P | H | 0.1343 | |
| 11 | E | H | 0.2765 | |
| 12 | L | H | 1.1088 | |
| 13 | V | H | 0.1304 | |
| 14 | K | H | -1.3403 | |
| 15 | P | H | -1.1150 | |
| 16 | G | H | -0.7507 | |
| 17 | A | H | -0.0896 | |
| 18 | L | H | 0.8233 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -0.6454 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.6102 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.4286 | |
| 25 | T | H | 0.0000 | |
| 26 | S | H | -1.0715 | |
| 27 | G | H | -0.9101 | |
| 28 | F | H | -0.4911 | |
| 29 | T | H | -0.5426 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.4724 | |
| 36 | R | H | -1.9030 | |
| 37 | Y | H | -0.4693 | |
| 38 | D | H | 0.0000 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | -0.2198 | |
| 44 | L | H | -0.2660 | |
| 45 | R | H | -0.9730 | |
| 46 | P | H | -0.8187 | |
| 47 | G | H | -1.0659 | |
| 48 | Q | H | -1.3087 | |
| 49 | G | H | -0.9271 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.7223 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | 0.0916 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | -0.6180 | |
| 58 | P | H | 0.0000 | |
| 59 | G | H | -1.7284 | |
| 62 | D | H | -2.2745 | |
| 63 | G | H | -1.3258 | |
| 64 | S | H | -0.7617 | |
| 65 | T | H | -0.3884 | |
| 66 | N | H | -0.5561 | |
| 67 | Y | H | -1.1827 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -3.4184 | |
| 70 | K | H | -3.1461 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.0797 | |
| 74 | G | H | -1.9936 | |
| 75 | K | H | -1.4790 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.6700 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.3266 | |
| 80 | A | H | -0.8845 | |
| 81 | D | H | -1.3221 | |
| 82 | K | H | -1.8426 | |
| 83 | S | H | -0.9996 | |
| 84 | S | H | -0.8640 | |
| 85 | S | H | -0.9575 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.1846 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.3917 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.0154 | |
| 93 | S | H | -0.3393 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.1029 | |
| 96 | S | H | -1.4487 | |
| 97 | E | H | -2.0179 | |
| 98 | N | H | 0.0000 | |
| 99 | S | H | -0.3863 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.5249 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | Q | H | 0.0000 | |
| 108 | H | H | -0.1744 | |
| 109 | Y | H | 0.1968 | |
| 110 | G | H | 0.0666 | |
| 111 | Y | H | 1.0806 | |
| 112A | G | H | 0.0000 | |
| 112 | D | H | -0.0585 | |
| 113 | G | H | 0.0000 | |
| 114 | A | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | V | H | 0.0000 | |
| 117 | Y | H | 0.2393 | |
| 118 | W | H | -0.4071 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.7050 | |
| 121 | G | H | -0.7370 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 1.0507 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.2141 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4102 | |
| 128 | A | H | -0.5155 | |
| 1 | D | L | -1.7300 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6670 | |
| 4 | M | L | 0.0000 | |
| 5 | S | L | -0.7681 | |
| 6 | Q | L | -0.9943 | |
| 7 | S | L | -0.8598 | |
| 8 | P | L | -0.5412 | |
| 9 | S | L | -0.6184 | |
| 10 | S | L | -0.5434 | |
| 11 | L | L | -0.2788 | |
| 12 | A | L | -0.5245 | |
| 13 | V | L | 0.0000 | |
| 14 | S | L | -0.8653 | |
| 15 | V | L | -0.0504 | |
| 16 | G | L | -0.8232 | |
| 17 | E | L | -2.0537 | |
| 18 | K | L | -2.4092 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.5169 | |
| 21 | V | L | 0.0000 | |
| 22 | S | L | -0.9340 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -2.2658 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.9632 | |
| 27 | Q | L | -1.5474 | |
| 28 | S | L | -1.0653 | |
| 29 | L | L | 0.0000 | |
| 30 | L | L | -0.5961 | |
| 31 | H | L | -0.9969 | |
| 32 | S | L | -1.1378 | |
| 33 | S | L | -1.2058 | |
| 34 | N | L | -1.8746 | |
| 35 | Q | L | -1.9939 | |
| 36 | Q | L | -1.3452 | |
| 37 | N | L | 0.0000 | |
| 38 | Y | L | 0.0000 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.5207 | |
| 46 | P | L | -1.0389 | |
| 47 | G | L | -1.4911 | |
| 48 | Q | L | -2.0946 | |
| 49 | S | L | -1.2613 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.9224 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1457 | |
| 56 | W | L | -0.3045 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.4891 | |
| 66 | T | L | -0.4783 | |
| 67 | R | L | -1.1941 | |
| 68 | E | L | -0.8408 | |
| 69 | S | L | -0.7071 | |
| 70 | G | L | -0.9667 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.3796 | |
| 74 | D | L | -2.2659 | |
| 75 | R | L | -1.7648 | |
| 76 | F | L | 0.0000 | |
| 77 | T | L | -0.8507 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.6162 | |
| 80 | G | L | -1.0575 | |
| 83 | S | L | -0.8925 | |
| 84 | G | L | -1.1184 | |
| 85 | T | L | -1.6047 | |
| 86 | D | L | -2.2017 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7867 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6001 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7626 | |
| 93 | S | L | -1.5776 | |
| 94 | V | L | 0.0000 | |
| 95 | R | L | -1.4279 | |
| 96 | A | L | -1.0301 | |
| 97 | E | L | -1.8823 | |
| 98 | D | L | 0.0000 | |
| 99 | L | L | -0.5179 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.1861 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | Y | L | -0.3497 | |
| 109 | R | L | -0.9058 | |
| 114 | Y | L | -0.3902 | |
| 115 | P | L | -0.9249 | |
| 116 | R | L | 0.0000 | |
| 117 | T | L | -0.1552 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7664 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.8516 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.8269 | |
| 126 | M | L | -0.4993 | |
| 127 | K | L | -1.4613 |