Project name: 6.33E12

Status: done

Started: 2026-07-07 07:48:51
Settings
Chain sequence(s) H: QVQLQQSGAELVRPGTSVKVTCKASGYAFTNYLIEWIKQRPGQGLEWIGVINPGSGGTNYNGKFKGKATLTADKSSNTAHMQVSSLTSEDSAVYFCTRLGHYDYNYFDFWGQGTTLTVSS
L: QIVLTQSPAIMSASPGEKVTISCSASSSISYMYWYQQKPGSSPKPWIYRTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQYHSYPRTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:25)
Show buried residues

Minimal score value
-2.7779
Maximal score value
1.4152
Average score
-0.5536
Total score value
-125.1147

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5234
2 V H -0.9255
3 Q H -1.7508
4 L H 0.0000
5 Q H -1.8924
6 Q H 0.0000
7 S H -1.0540
8 G H -0.6554
9 A H 0.0754
11 E H 0.2076
12 L H 1.0560
13 V H -0.1358
14 R H -1.7915
15 P H -1.4515
16 G H -1.1857
17 T H -0.9457
18 S H -1.0176
19 V H 0.0000
20 K H -1.8530
21 V H 0.0000
22 T H -0.9989
23 C H 0.0000
24 K H -1.6470
25 A H 0.0000
26 S H -1.1901
27 G H -0.9991
28 Y H -0.5525
29 A H -0.5299
30 F H 0.0000
35 T H -1.2564
36 N H -1.2686
37 Y H -0.3013
38 L H -0.1515
39 I H 0.0000
40 E H 0.0000
41 W H 0.0000
42 I H 0.0000
43 K H 0.0000
44 Q H -0.8367
45 R H -1.4332
46 P H -1.0494
47 G H -1.3391
48 Q H -1.9231
49 G H -1.2869
50 L H 0.0000
51 E H -1.0429
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 V H 0.0000
56 I H 0.0000
57 N H -1.0584
58 P H 0.0000
59 G H -1.2405
62 S H -0.9760
63 G H -1.2230
64 G H -1.0683
65 T H -0.9704
66 N H -1.4202
67 Y H -1.2594
68 N H -1.4644
69 G H -1.9780
70 K H -2.5719
71 F H 0.0000
72 K H -2.7779
74 G H -1.7599
75 K H -1.5227
76 A H 0.0000
77 T H -0.9891
78 L H 0.0000
79 T H -0.8545
80 A H -1.2733
81 D H -1.9053
82 K H -2.3859
83 S H -1.4138
84 S H -1.2473
85 N H -1.5856
86 T H 0.0000
87 A H 0.0000
88 H H -0.9641
89 M H 0.0000
90 Q H -1.2214
91 V H 0.0000
92 S H -0.8529
93 S H -0.8770
94 L H 0.0000
95 T H -1.3165
96 S H -1.4862
97 E H -2.0221
98 D H 0.0000
99 S H -0.6162
100 A H 0.0000
101 V H 0.0510
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 L H 0.0000
108 G H 0.0000
109 H H -0.6273
110 Y H 0.1532
111 D H -1.2983
112 Y H -0.4418
113 N H -0.4638
114 Y H -0.0262
115 F H 0.0000
116 D H -0.2205
117 F H 0.0194
118 W H -0.5161
119 G H 0.0000
120 Q H -1.5782
121 G H -0.7955
122 T H 0.0000
123 T H 0.0077
124 L H 0.0000
125 T H -0.0170
126 V H 0.0000
127 S H -0.6884
128 S H -0.8161
1 Q L -0.6826
2 I L 0.0000
3 V L 1.2981
4 L L 0.0000
5 T L 0.0947
6 Q L 0.0000
7 S L -0.0746
8 P L 0.2729
9 A L 0.5900
10 I L 1.4152
11 M L 0.4562
12 S L -0.5710
13 A L 0.0000
14 S L -1.5742
15 P L -1.5207
16 G L -1.9235
17 E L -2.6239
18 K L -2.6119
19 V L 0.0000
20 T L -0.6761
21 I L 0.0000
22 S L -0.3187
23 C L 0.0000
24 S L -0.1937
25 A L 0.0000
26 S L 0.0197
27 S L -0.3612
28 S L -0.5856
29 I L 0.0000
37 S L -0.3555
38 Y L -0.0805
39 M L 0.0000
40 Y L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.1157
45 K L -1.4762
46 P L -0.8503
47 G L -0.9719
48 S L -1.1245
49 S L -0.9746
50 P L 0.0000
51 K L -1.5210
52 P L -0.6129
53 W L 0.0000
54 I L 0.0000
55 Y L 0.0376
56 R L -0.4857
57 T L 0.0000
65 S L -0.3946
66 N L -0.3396
67 L L 0.1411
68 A L -0.2754
69 S L -0.3475
70 G L -0.4234
71 V L -0.2701
72 P L -0.3476
74 A L -0.1354
75 R L -0.7764
76 F L 0.0000
77 S L -0.3264
78 G L 0.0000
79 S L -0.5598
80 G L -0.6513
83 S L -0.5838
84 G L -0.5624
85 T L -0.5291
86 S L -0.6293
87 Y L 0.0000
88 S L -0.3733
89 L L 0.0000
90 T L -0.6161
91 I L 0.0000
92 S L -1.4809
93 S L -1.8314
94 M L 0.0000
95 E L -1.8758
96 A L -1.5133
97 E L -2.1773
98 D L 0.0000
99 A L -1.3457
100 A L 0.0000
101 T L 0.0000
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L -0.1322
108 H L -0.6948
109 S L -0.2359
114 Y L 0.2708
115 P L -0.3635
116 R L 0.0000
117 T L 0.0868
118 F L 0.0000
119 G L 0.0000
120 G L -0.7480
121 G L 0.0000
122 T L 0.0000
123 K L -0.6242
124 L L 0.0000
125 E L -1.1391
126 I L -0.5572
127 K L -1.4405
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Laboratory of Theory of Biopolymers 2018