| Chain sequence(s) |
H: QVQLQQSGAELVRPGTSVKVTCKASGYAFTNYLIEWIKQRPGQGLEWIGVINPGSGGTNYNGKFKGKATLTADKSSNTAHMQVSSLTSEDSAVYFCTRLGHYDYNYFDFWGQGTTLTVSS
L: QIVLTQSPAIMSASPGEKVTISCSASSSISYMYWYQQKPGSSPKPWIYRTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQYHSYPRTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5234 | |
| 2 | V | H | -0.9255 | |
| 3 | Q | H | -1.7508 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.8924 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -1.0540 | |
| 8 | G | H | -0.6554 | |
| 9 | A | H | 0.0754 | |
| 11 | E | H | 0.2076 | |
| 12 | L | H | 1.0560 | |
| 13 | V | H | -0.1358 | |
| 14 | R | H | -1.7915 | |
| 15 | P | H | -1.4515 | |
| 16 | G | H | -1.1857 | |
| 17 | T | H | -0.9457 | |
| 18 | S | H | -1.0176 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.8530 | |
| 21 | V | H | 0.0000 | |
| 22 | T | H | -0.9989 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.6470 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.1901 | |
| 27 | G | H | -0.9991 | |
| 28 | Y | H | -0.5525 | |
| 29 | A | H | -0.5299 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.2564 | |
| 36 | N | H | -1.2686 | |
| 37 | Y | H | -0.3013 | |
| 38 | L | H | -0.1515 | |
| 39 | I | H | 0.0000 | |
| 40 | E | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | I | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8367 | |
| 45 | R | H | -1.4332 | |
| 46 | P | H | -1.0494 | |
| 47 | G | H | -1.3391 | |
| 48 | Q | H | -1.9231 | |
| 49 | G | H | -1.2869 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0429 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -1.0584 | |
| 58 | P | H | 0.0000 | |
| 59 | G | H | -1.2405 | |
| 62 | S | H | -0.9760 | |
| 63 | G | H | -1.2230 | |
| 64 | G | H | -1.0683 | |
| 65 | T | H | -0.9704 | |
| 66 | N | H | -1.4202 | |
| 67 | Y | H | -1.2594 | |
| 68 | N | H | -1.4644 | |
| 69 | G | H | -1.9780 | |
| 70 | K | H | -2.5719 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.7779 | |
| 74 | G | H | -1.7599 | |
| 75 | K | H | -1.5227 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.9891 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.8545 | |
| 80 | A | H | -1.2733 | |
| 81 | D | H | -1.9053 | |
| 82 | K | H | -2.3859 | |
| 83 | S | H | -1.4138 | |
| 84 | S | H | -1.2473 | |
| 85 | N | H | -1.5856 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | H | H | -0.9641 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.2214 | |
| 91 | V | H | 0.0000 | |
| 92 | S | H | -0.8529 | |
| 93 | S | H | -0.8770 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.3165 | |
| 96 | S | H | -1.4862 | |
| 97 | E | H | -2.0221 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6162 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0510 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | T | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | L | H | 0.0000 | |
| 108 | G | H | 0.0000 | |
| 109 | H | H | -0.6273 | |
| 110 | Y | H | 0.1532 | |
| 111 | D | H | -1.2983 | |
| 112 | Y | H | -0.4418 | |
| 113 | N | H | -0.4638 | |
| 114 | Y | H | -0.0262 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.2205 | |
| 117 | F | H | 0.0194 | |
| 118 | W | H | -0.5161 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.5782 | |
| 121 | G | H | -0.7955 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | 0.0077 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.0170 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6884 | |
| 128 | S | H | -0.8161 | |
| 1 | Q | L | -0.6826 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 1.2981 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | 0.0947 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.0746 | |
| 8 | P | L | 0.2729 | |
| 9 | A | L | 0.5900 | |
| 10 | I | L | 1.4152 | |
| 11 | M | L | 0.4562 | |
| 12 | S | L | -0.5710 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -1.5742 | |
| 15 | P | L | -1.5207 | |
| 16 | G | L | -1.9235 | |
| 17 | E | L | -2.6239 | |
| 18 | K | L | -2.6119 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6761 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.3187 | |
| 23 | C | L | 0.0000 | |
| 24 | S | L | -0.1937 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | 0.0197 | |
| 27 | S | L | -0.3612 | |
| 28 | S | L | -0.5856 | |
| 29 | I | L | 0.0000 | |
| 37 | S | L | -0.3555 | |
| 38 | Y | L | -0.0805 | |
| 39 | M | L | 0.0000 | |
| 40 | Y | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -1.1157 | |
| 45 | K | L | -1.4762 | |
| 46 | P | L | -0.8503 | |
| 47 | G | L | -0.9719 | |
| 48 | S | L | -1.1245 | |
| 49 | S | L | -0.9746 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.5210 | |
| 52 | P | L | -0.6129 | |
| 53 | W | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.0376 | |
| 56 | R | L | -0.4857 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.3946 | |
| 66 | N | L | -0.3396 | |
| 67 | L | L | 0.1411 | |
| 68 | A | L | -0.2754 | |
| 69 | S | L | -0.3475 | |
| 70 | G | L | -0.4234 | |
| 71 | V | L | -0.2701 | |
| 72 | P | L | -0.3476 | |
| 74 | A | L | -0.1354 | |
| 75 | R | L | -0.7764 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3264 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.5598 | |
| 80 | G | L | -0.6513 | |
| 83 | S | L | -0.5838 | |
| 84 | G | L | -0.5624 | |
| 85 | T | L | -0.5291 | |
| 86 | S | L | -0.6293 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.3733 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6161 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4809 | |
| 93 | S | L | -1.8314 | |
| 94 | M | L | 0.0000 | |
| 95 | E | L | -1.8758 | |
| 96 | A | L | -1.5133 | |
| 97 | E | L | -2.1773 | |
| 98 | D | L | 0.0000 | |
| 99 | A | L | -1.3457 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | 0.0000 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | -0.1322 | |
| 108 | H | L | -0.6948 | |
| 109 | S | L | -0.2359 | |
| 114 | Y | L | 0.2708 | |
| 115 | P | L | -0.3635 | |
| 116 | R | L | 0.0000 | |
| 117 | T | L | 0.0868 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7480 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.6242 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.1391 | |
| 126 | I | L | -0.5572 | |
| 127 | K | L | -1.4405 |