Project name: BRZ [mutate: ER53A]

Status: done

Started: 2025-08-12 05:59:58
Settings
Chain sequence(s) A: PDKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFYDEKRNLQCICDYCEY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues ER53A
Energy difference between WT (input) and mutated protein (by FoldX) -0.815126 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:39)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:04)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:40)
Show buried residues

Minimal score value
-3.8234
Maximal score value
0.586
Average score
-1.1628
Total score value
-62.7885

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P A -1.7319
2 D A -2.9464
3 K A -3.3103
4 C A -2.5387
5 K A -3.0822
6 K A -2.2672
7 V A -0.8340
8 Y A -1.4072
9 E A -2.2652
10 N A -1.9015
11 Y A 0.0000
12 P A -0.6215
13 V A 0.2614
14 S A -0.0423
15 K A -0.4464
16 C A 0.0000
17 Q A -0.4434
18 L A 0.5672
19 A A -0.3681
20 N A -1.3719
21 Q A -1.0324
22 C A 0.0000
23 N A -1.0223
24 Y A -0.5226
25 D A -0.8577
26 C A 0.0000
27 K A -1.3351
28 L A -0.3869
29 D A -2.1426
30 K A -2.5637
31 H A -2.0994
32 A A 0.0000
33 R A -1.1912
34 S A -1.1951
35 G A -1.5244
36 E A -1.7324
37 C A -0.0805
38 F A 0.5860
39 Y A -0.1841
40 D A -2.2801
41 E A -3.4552
42 K A -3.8234
43 R A -3.5523
44 N A -2.3345
45 L A -0.4044
46 Q A -0.4491
47 C A 0.0000
48 I A -0.6032
49 C A 0.0000
50 D A 0.0000
51 Y A -1.3781
52 C A -1.0304
53 R A -1.4562 mutated: ER53A
54 Y A 0.0124
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Laboratory of Theory of Biopolymers 2018