Chain sequence(s) |
A: PDKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFYDEKRNLQCICDYCEY
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | ER53A |
Energy difference between WT (input) and mutated protein (by FoldX) | -0.815126 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:39) [INFO] FoldX: Starting FoldX energy minimalization (00:01:04) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:40) [INFO] Main: Simulation completed successfully. (00:01:40) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | P | A | -1.7319 | |
2 | D | A | -2.9464 | |
3 | K | A | -3.3103 | |
4 | C | A | -2.5387 | |
5 | K | A | -3.0822 | |
6 | K | A | -2.2672 | |
7 | V | A | -0.8340 | |
8 | Y | A | -1.4072 | |
9 | E | A | -2.2652 | |
10 | N | A | -1.9015 | |
11 | Y | A | 0.0000 | |
12 | P | A | -0.6215 | |
13 | V | A | 0.2614 | |
14 | S | A | -0.0423 | |
15 | K | A | -0.4464 | |
16 | C | A | 0.0000 | |
17 | Q | A | -0.4434 | |
18 | L | A | 0.5672 | |
19 | A | A | -0.3681 | |
20 | N | A | -1.3719 | |
21 | Q | A | -1.0324 | |
22 | C | A | 0.0000 | |
23 | N | A | -1.0223 | |
24 | Y | A | -0.5226 | |
25 | D | A | -0.8577 | |
26 | C | A | 0.0000 | |
27 | K | A | -1.3351 | |
28 | L | A | -0.3869 | |
29 | D | A | -2.1426 | |
30 | K | A | -2.5637 | |
31 | H | A | -2.0994 | |
32 | A | A | 0.0000 | |
33 | R | A | -1.1912 | |
34 | S | A | -1.1951 | |
35 | G | A | -1.5244 | |
36 | E | A | -1.7324 | |
37 | C | A | -0.0805 | |
38 | F | A | 0.5860 | |
39 | Y | A | -0.1841 | |
40 | D | A | -2.2801 | |
41 | E | A | -3.4552 | |
42 | K | A | -3.8234 | |
43 | R | A | -3.5523 | |
44 | N | A | -2.3345 | |
45 | L | A | -0.4044 | |
46 | Q | A | -0.4491 | |
47 | C | A | 0.0000 | |
48 | I | A | -0.6032 | |
49 | C | A | 0.0000 | |
50 | D | A | 0.0000 | |
51 | Y | A | -1.3781 | |
52 | C | A | -1.0304 | |
53 | R | A | -1.4562 | mutated: ER53A |
54 | Y | A | 0.0124 |