| Chain sequence(s) |
A: GGKGHGG
C: GGKGHGG B: GGKGHGG E: GGKGHGG D: GGKGHGG G: GGKGHGG F: GGKGHGG I: GGKGHGG H: GGKGHGG K: GGKGHGG J: GGKGHGG M: GGKGHGG L: GGKGHGG O: GGKGHGG N: GGKGHGG Q: GGKGHGG P: GGKGHGG S: GGKGHGG R: GGKGHGG T: GGKGHGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:14:48)
[INFO] Main: Simulation completed successfully. (00:14:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.5796 | |
| 2 | G | A | -2.0769 | |
| 3 | K | A | -2.4173 | |
| 4 | G | A | -2.2404 | |
| 5 | H | A | -1.9794 | |
| 6 | G | A | 0.0000 | |
| 7 | G | A | 0.0000 | |
| 1 | G | B | -1.6478 | |
| 2 | G | B | -2.3478 | |
| 3 | K | B | -3.2340 | |
| 4 | G | B | -2.3850 | |
| 5 | H | B | 0.0000 | |
| 6 | G | B | 0.0000 | |
| 7 | G | B | 0.0000 | |
| 1 | G | C | -1.6221 | |
| 2 | G | C | -2.7830 | |
| 3 | K | C | -3.8536 | |
| 4 | G | C | -3.2657 | |
| 5 | H | C | 0.0000 | |
| 6 | G | C | 0.0000 | |
| 7 | G | C | 0.0000 | |
| 1 | G | D | -2.4091 | |
| 2 | G | D | 0.0000 | |
| 3 | K | D | -4.6510 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -2.6745 | |
| 6 | G | D | 0.0000 | |
| 7 | G | D | 0.0000 | |
| 1 | G | E | -2.0892 | |
| 2 | G | E | -2.9482 | |
| 3 | K | E | -4.3762 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | 0.0000 | |
| 6 | G | E | 0.0000 | |
| 7 | G | E | -1.0627 | |
| 1 | G | F | -2.2369 | |
| 2 | G | F | -2.8524 | |
| 3 | K | F | -4.0549 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -3.0069 | |
| 6 | G | F | 0.0000 | |
| 7 | G | F | -0.9867 | |
| 1 | G | G | -1.6262 | |
| 2 | G | G | -1.8429 | |
| 3 | K | G | -2.9420 | |
| 4 | G | G | -2.5581 | |
| 5 | H | G | -2.3151 | |
| 6 | G | G | 0.0000 | |
| 7 | G | G | 0.0000 | |
| 1 | G | H | -1.3153 | |
| 2 | G | H | -1.4757 | |
| 3 | K | H | -2.1938 | |
| 4 | G | H | -2.1932 | |
| 5 | H | H | -2.4514 | |
| 6 | G | H | 0.0000 | |
| 7 | G | H | -1.3931 | |
| 1 | G | I | -1.3829 | |
| 2 | G | I | -2.2709 | |
| 3 | K | I | -2.5919 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -2.1468 | |
| 6 | G | I | 0.0000 | |
| 7 | G | I | 0.0000 | |
| 1 | G | J | -1.2610 | |
| 2 | G | J | -1.9093 | |
| 3 | K | J | -2.8828 | |
| 4 | G | J | -2.1793 | |
| 5 | H | J | -2.1818 | |
| 6 | G | J | 0.0000 | |
| 7 | G | J | -1.1667 | |
| 1 | G | K | -1.5964 | |
| 2 | G | K | -2.3913 | |
| 3 | K | K | -2.7101 | |
| 4 | G | K | -2.5080 | |
| 5 | H | K | -2.1214 | |
| 6 | G | K | 0.0000 | |
| 7 | G | K | -1.1514 | |
| 1 | G | L | -1.6267 | |
| 2 | G | L | -2.5432 | |
| 3 | K | L | -3.5002 | |
| 4 | G | L | -2.5522 | |
| 5 | H | L | -2.2108 | |
| 6 | G | L | 0.0000 | |
| 7 | G | L | 0.0000 | |
| 1 | G | M | -1.7116 | |
| 2 | G | M | -2.3002 | |
| 3 | K | M | -3.3157 | |
| 4 | G | M | -2.9414 | |
| 5 | H | M | -2.1833 | |
| 6 | G | M | 0.0000 | |
| 7 | G | M | 0.0000 | |
| 1 | G | N | -1.8120 | |
| 2 | G | N | -3.0990 | |
| 3 | K | N | -3.6811 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | -2.5206 | |
| 6 | G | N | 0.0000 | |
| 7 | G | N | 0.0000 | |
| 1 | G | O | -1.8108 | |
| 2 | G | O | 0.0000 | |
| 3 | K | O | -3.7765 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | 0.0000 | |
| 6 | G | O | 0.0000 | |
| 7 | G | O | 0.0000 | |
| 1 | G | P | -2.3003 | |
| 2 | G | P | 0.0000 | |
| 3 | K | P | -3.6466 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | 0.0000 | |
| 6 | G | P | 0.0000 | |
| 7 | G | P | -1.0669 | |
| 1 | G | Q | -2.6017 | |
| 2 | G | Q | 0.0000 | |
| 3 | K | Q | -3.5494 | |
| 4 | G | Q | -2.5290 | |
| 5 | H | Q | 0.0000 | |
| 6 | G | Q | 0.0000 | |
| 7 | G | Q | 0.0000 | |
| 1 | G | R | -2.6491 | |
| 2 | G | R | 0.0000 | |
| 3 | K | R | -3.8188 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | 0.0000 | |
| 6 | G | R | -1.8779 | |
| 7 | G | R | 0.0000 | |
| 1 | G | S | -2.7706 | |
| 2 | G | S | -2.6018 | |
| 3 | K | S | -3.0757 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | -1.7294 | |
| 6 | G | S | 0.0000 | |
| 7 | G | S | 0.0000 | |
| 1 | G | T | -1.8104 | |
| 2 | G | T | -1.9362 | |
| 3 | K | T | -2.2772 | |
| 4 | G | T | -1.7890 | |
| 5 | H | T | -1.5270 | |
| 6 | G | T | -1.1895 | |
| 7 | G | T | -1.3542 |