Project name: GGKGHGG20

Status: done

Started: 2026-05-21 08:53:52
Settings
Chain sequence(s) A: GGKGHGG
C: GGKGHGG
B: GGKGHGG
E: GGKGHGG
D: GGKGHGG
G: GGKGHGG
F: GGKGHGG
I: GGKGHGG
H: GGKGHGG
K: GGKGHGG
J: GGKGHGG
M: GGKGHGG
L: GGKGHGG
O: GGKGHGG
N: GGKGHGG
Q: GGKGHGG
P: GGKGHGG
S: GGKGHGG
R: GGKGHGG
T: GGKGHGG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:14:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:14:51)
Show buried residues

Minimal score value
-4.651
Maximal score value
0.0
Average score
-1.4802
Total score value
-207.2261

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.5796
2 G A -2.0769
3 K A -2.4173
4 G A -2.2404
5 H A -1.9794
6 G A 0.0000
7 G A 0.0000
1 G B -1.6478
2 G B -2.3478
3 K B -3.2340
4 G B -2.3850
5 H B 0.0000
6 G B 0.0000
7 G B 0.0000
1 G C -1.6221
2 G C -2.7830
3 K C -3.8536
4 G C -3.2657
5 H C 0.0000
6 G C 0.0000
7 G C 0.0000
1 G D -2.4091
2 G D 0.0000
3 K D -4.6510
4 G D 0.0000
5 H D -2.6745
6 G D 0.0000
7 G D 0.0000
1 G E -2.0892
2 G E -2.9482
3 K E -4.3762
4 G E 0.0000
5 H E 0.0000
6 G E 0.0000
7 G E -1.0627
1 G F -2.2369
2 G F -2.8524
3 K F -4.0549
4 G F 0.0000
5 H F -3.0069
6 G F 0.0000
7 G F -0.9867
1 G G -1.6262
2 G G -1.8429
3 K G -2.9420
4 G G -2.5581
5 H G -2.3151
6 G G 0.0000
7 G G 0.0000
1 G H -1.3153
2 G H -1.4757
3 K H -2.1938
4 G H -2.1932
5 H H -2.4514
6 G H 0.0000
7 G H -1.3931
1 G I -1.3829
2 G I -2.2709
3 K I -2.5919
4 G I 0.0000
5 H I -2.1468
6 G I 0.0000
7 G I 0.0000
1 G J -1.2610
2 G J -1.9093
3 K J -2.8828
4 G J -2.1793
5 H J -2.1818
6 G J 0.0000
7 G J -1.1667
1 G K -1.5964
2 G K -2.3913
3 K K -2.7101
4 G K -2.5080
5 H K -2.1214
6 G K 0.0000
7 G K -1.1514
1 G L -1.6267
2 G L -2.5432
3 K L -3.5002
4 G L -2.5522
5 H L -2.2108
6 G L 0.0000
7 G L 0.0000
1 G M -1.7116
2 G M -2.3002
3 K M -3.3157
4 G M -2.9414
5 H M -2.1833
6 G M 0.0000
7 G M 0.0000
1 G N -1.8120
2 G N -3.0990
3 K N -3.6811
4 G N 0.0000
5 H N -2.5206
6 G N 0.0000
7 G N 0.0000
1 G O -1.8108
2 G O 0.0000
3 K O -3.7765
4 G O 0.0000
5 H O 0.0000
6 G O 0.0000
7 G O 0.0000
1 G P -2.3003
2 G P 0.0000
3 K P -3.6466
4 G P 0.0000
5 H P 0.0000
6 G P 0.0000
7 G P -1.0669
1 G Q -2.6017
2 G Q 0.0000
3 K Q -3.5494
4 G Q -2.5290
5 H Q 0.0000
6 G Q 0.0000
7 G Q 0.0000
1 G R -2.6491
2 G R 0.0000
3 K R -3.8188
4 G R 0.0000
5 H R 0.0000
6 G R -1.8779
7 G R 0.0000
1 G S -2.7706
2 G S -2.6018
3 K S -3.0757
4 G S 0.0000
5 H S -1.7294
6 G S 0.0000
7 G S 0.0000
1 G T -1.8104
2 G T -1.9362
3 K T -2.2772
4 G T -1.7890
5 H T -1.5270
6 G T -1.1895
7 G T -1.3542
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Laboratory of Theory of Biopolymers 2018