| Chain sequence(s) |
C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | C |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | IS93C,LV45C,WF47C |
| Energy difference between WT (input) and mutated protein (by FoldX) | 4.97454 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:24)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:38)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:00)
[INFO] Main: Simulation completed successfully. (00:01:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | C | -2.0065 | |
| 2 | V | C | -0.9212 | |
| 3 | Q | C | -1.2504 | |
| 4 | L | C | 0.0000 | |
| 5 | V | C | 0.5599 | |
| 6 | E | C | 0.2158 | |
| 7 | S | C | -0.4143 | |
| 8 | G | C | -0.8174 | |
| 9 | G | C | -0.0775 | |
| 10 | G | C | 0.8567 | |
| 11 | L | C | 1.4386 | |
| 12 | V | C | -0.0381 | |
| 13 | Q | C | -1.3366 | |
| 14 | P | C | -1.4883 | |
| 15 | G | C | -1.4134 | |
| 16 | G | C | -0.9785 | |
| 17 | S | C | -1.2309 | |
| 18 | L | C | -0.9631 | |
| 19 | R | C | -2.1462 | |
| 20 | L | C | 0.0000 | |
| 21 | S | C | -0.5418 | |
| 22 | C | C | 0.0000 | |
| 23 | A | C | -0.2019 | |
| 24 | A | C | 0.0000 | |
| 25 | S | C | -0.2017 | |
| 26 | D | C | 0.0000 | |
| 27 | F | C | 1.5458 | |
| 28 | T | C | 0.2524 | |
| 29 | F | C | 0.0000 | |
| 30 | R | C | -2.0330 | |
| 31 | S | C | -0.8870 | |
| 32 | Y | C | -1.2169 | |
| 33 | E | C | -1.1671 | |
| 34 | M | C | 0.0000 | |
| 35 | S | C | 0.0000 | |
| 36 | W | C | 0.0000 | |
| 37 | V | C | 0.0000 | |
| 38 | R | C | 0.0000 | |
| 39 | Q | C | -0.5545 | |
| 40 | A | C | -1.1742 | |
| 41 | P | C | -1.4449 | |
| 42 | G | C | -1.4363 | |
| 43 | K | C | -2.1124 | |
| 44 | G | C | -0.9491 | |
| 45 | V | C | 0.7049 | mutated: LV45C |
| 46 | E | C | -0.0517 | |
| 47 | F | C | 0.8564 | mutated: WF47C |
| 48 | V | C | 0.0000 | |
| 49 | S | C | 0.0000 | |
| 50 | A | C | 0.0000 | |
| 51 | I | C | 0.0000 | |
| 52 | S | C | -0.5546 | |
| 53 | G | C | -1.2460 | |
| 54 | S | C | -1.2291 | |
| 55 | G | C | -1.0820 | |
| 56 | G | C | -0.7344 | |
| 57 | S | C | -0.2352 | |
| 58 | T | C | 0.3563 | |
| 59 | Y | C | 0.9279 | |
| 60 | Y | C | -0.0978 | |
| 61 | A | C | -0.9515 | |
| 62 | D | C | -2.2988 | |
| 63 | S | C | -1.7074 | |
| 64 | V | C | 0.0000 | |
| 65 | K | C | -2.3288 | |
| 66 | G | C | -1.6115 | |
| 67 | R | C | 0.0000 | |
| 68 | F | C | 0.0000 | |
| 69 | T | C | -0.6316 | |
| 70 | I | C | 0.0000 | |
| 71 | S | C | -0.5624 | |
| 72 | R | C | -1.3627 | |
| 73 | D | C | -1.9805 | |
| 74 | N | C | -2.1902 | |
| 75 | S | C | -1.7905 | |
| 76 | K | C | -2.3163 | |
| 77 | N | C | -1.6491 | |
| 78 | T | C | 0.0000 | |
| 79 | L | C | 0.0000 | |
| 80 | Y | C | -0.6696 | |
| 81 | L | C | 0.0000 | |
| 82 | Q | C | -1.2337 | |
| 83 | M | C | 0.0000 | |
| 84 | N | C | -1.3327 | |
| 85 | S | C | -1.2322 | |
| 86 | L | C | 0.0000 | |
| 87 | R | C | -2.4718 | |
| 88 | A | C | -1.8889 | |
| 89 | E | C | -2.3441 | |
| 90 | D | C | 0.0000 | |
| 91 | T | C | -0.5819 | |
| 92 | A | C | 0.0000 | |
| 93 | S | C | 0.4157 | mutated: IS93C |
| 94 | Y | C | 0.0000 | |
| 95 | Y | C | 0.5539 | |
| 96 | C | C | 0.0000 | |
| 97 | A | C | 0.0000 | |
| 98 | R | C | 0.0000 | |
| 99 | L | C | 0.0000 | |
| 100 | R | C | -3.2250 | |
| 101 | D | C | -3.3576 | |
| 102 | G | C | -2.1243 | |
| 103 | F | C | -1.2644 | |
| 104 | N | C | -2.4669 | |
| 105 | K | C | -3.2158 | |
| 106 | G | C | -1.9531 | |
| 107 | F | C | -1.0687 | |
| 108 | D | C | -1.1413 | |
| 109 | Y | C | -0.2469 | |
| 110 | W | C | 0.5114 | |
| 111 | G | C | -0.0858 | |
| 112 | Q | C | -0.9614 | |
| 113 | G | C | -0.1171 | |
| 114 | T | C | 0.3681 | |
| 115 | L | C | 1.4515 | |
| 116 | V | C | 0.0000 | |
| 117 | T | C | 0.2453 | |
| 118 | V | C | 0.0000 | |
| 119 | S | C | -0.7737 | |
| 120 | S | C | -1.0597 |