Project name: obj1 [mutate: LV45C, WF47C, IS93C]

Status: done

Started: 2025-02-10 12:43:13
Settings
Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues IS93C,LV45C,WF47C
Energy difference between WT (input) and mutated protein (by FoldX) 4.97454 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:38)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:01)
Show buried residues

Minimal score value
-3.3576
Maximal score value
1.5458
Average score
-0.6598
Total score value
-79.1713

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0065
2 V C -0.9212
3 Q C -1.2504
4 L C 0.0000
5 V C 0.5599
6 E C 0.2158
7 S C -0.4143
8 G C -0.8174
9 G C -0.0775
10 G C 0.8567
11 L C 1.4386
12 V C -0.0381
13 Q C -1.3366
14 P C -1.4883
15 G C -1.4134
16 G C -0.9785
17 S C -1.2309
18 L C -0.9631
19 R C -2.1462
20 L C 0.0000
21 S C -0.5418
22 C C 0.0000
23 A C -0.2019
24 A C 0.0000
25 S C -0.2017
26 D C 0.0000
27 F C 1.5458
28 T C 0.2524
29 F C 0.0000
30 R C -2.0330
31 S C -0.8870
32 Y C -1.2169
33 E C -1.1671
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.5545
40 A C -1.1742
41 P C -1.4449
42 G C -1.4363
43 K C -2.1124
44 G C -0.9491
45 V C 0.7049 mutated: LV45C
46 E C -0.0517
47 F C 0.8564 mutated: WF47C
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5546
53 G C -1.2460
54 S C -1.2291
55 G C -1.0820
56 G C -0.7344
57 S C -0.2352
58 T C 0.3563
59 Y C 0.9279
60 Y C -0.0978
61 A C -0.9515
62 D C -2.2988
63 S C -1.7074
64 V C 0.0000
65 K C -2.3288
66 G C -1.6115
67 R C 0.0000
68 F C 0.0000
69 T C -0.6316
70 I C 0.0000
71 S C -0.5624
72 R C -1.3627
73 D C -1.9805
74 N C -2.1902
75 S C -1.7905
76 K C -2.3163
77 N C -1.6491
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6696
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.4718
88 A C -1.8889
89 E C -2.3441
90 D C 0.0000
91 T C -0.5819
92 A C 0.0000
93 S C 0.4157 mutated: IS93C
94 Y C 0.0000
95 Y C 0.5539
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.2250
101 D C -3.3576
102 G C -2.1243
103 F C -1.2644
104 N C -2.4669
105 K C -3.2158
106 G C -1.9531
107 F C -1.0687
108 D C -1.1413
109 Y C -0.2469
110 W C 0.5114
111 G C -0.0858
112 Q C -0.9614
113 G C -0.1171
114 T C 0.3681
115 L C 1.4515
116 V C 0.0000
117 T C 0.2453
118 V C 0.0000
119 S C -0.7737
120 S C -1.0597
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018