Project name: Nb_A

Status: done

Started: 2025-07-16 08:37:56
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGGSDFDFSNYSLGWFRQAPGQGLEAVAAINPLGQYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAANENIPRNMFNPSDYQYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:42)
Show buried residues

Minimal score value
-2.9445
Maximal score value
1.7222
Average score
-0.5875
Total score value
-75.199

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.8204
2 V A 0.0000
3 Q A -1.1773
4 L A 0.0000
5 V A 0.8413
6 E A 0.3365
7 S A -0.1914
8 G A -0.6908
9 G A 0.1270
10 G A 0.7124
11 L A 1.4255
12 V A -0.0869
13 Q A -1.4186
14 P A -1.8515
15 G A -1.5948
16 G A -1.0764
17 S A -1.3360
18 L A -0.9079
19 R A -2.1248
20 L A 0.0000
21 S A -0.4515
22 C A 0.0000
23 A A -0.1894
24 A A 0.0000
25 S A -1.0474
26 G A -1.7140
27 G A -1.7832
28 S A -1.5967
29 D A -2.3887
30 F A -2.0670
31 D A -2.4586
32 F A 0.0000
33 S A -1.3687
34 N A -1.8575
35 Y A 0.0000
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.6156
43 A A -0.9432
44 P A -0.9662
45 G A -1.2529
46 Q A -1.7920
47 G A -1.1446
48 L A -0.3270
49 E A -0.6255
50 A A 0.0000
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 N A 0.0000
56 P A 0.0000
57 L A 0.9764
58 G A 0.1107
59 Q A -0.1602
60 Y A 0.9857
61 T A 0.4350
62 Y A 0.5686
63 Y A -0.4269
64 A A -1.0628
65 D A -2.4807
66 S A -1.8385
67 V A 0.0000
68 K A -2.6005
69 G A -1.7700
70 R A -1.5585
71 F A 0.0000
72 T A -0.8094
73 I A 0.0000
74 S A -0.4063
75 R A -0.9540
76 D A -1.8416
77 N A -2.1345
78 S A -1.7725
79 K A -2.4803
80 N A -1.9919
81 T A 0.0000
82 L A 0.0000
83 Y A -0.6291
84 L A 0.0000
85 Q A -1.2725
86 M A 0.0000
87 N A -1.5745
88 S A -1.4813
89 L A 0.0000
90 R A -2.9445
91 A A -2.0246
92 E A -2.4747
93 D A 0.0000
94 T A -0.4997
95 A A 0.0000
96 V A 0.8196
97 Y A 0.0000
98 Y A 0.3103
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 N A 0.0000
103 E A -2.6212
104 N A -1.7736
105 I A 0.3253
106 P A 0.0000
107 R A -1.4883
108 N A -0.4172
109 M A 0.0000
110 F A 1.2883
111 N A -0.0582
112 P A -0.0827
113 S A -0.4017
114 D A 0.0000
115 Y A 0.0000
116 Q A -1.3844
117 Y A -0.6198
118 W A 0.0382
119 G A -0.1493
120 Q A -0.9145
121 G A 0.0373
122 T A 0.5728
123 L A 1.7222
124 V A 0.0000
125 T A 0.3340
126 V A 0.0000
127 S A -0.7321
128 S A -0.4671
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Laboratory of Theory of Biopolymers 2018