Project name: Mb5-11_VLFFIV

Status: done

Started: 2026-07-06 06:36:00
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Chain sequence(s) A: MQANSGSLEVVEASPTSLQVSWDAFHRYHNGFTHPVRYYRLTYGETGGNSPVQEFTVPGSKSTATFSGLKPGVDYTFTVYAVTWYPRYGYGESGPISVNYRTELDKPSQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-2.9248
Maximal score value
1.4432
Average score
-0.7766
Total score value
-84.6478

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3378
2 Q A -1.0144
3 A A -1.2220
4 N A -2.0166
5 S A -1.3977
6 G A -1.6630
7 S A -1.3376
8 L A 0.0000
9 E A -1.8570
10 V A -0.6183
11 V A -0.0027
12 E A -1.4321
13 A A -1.0883
14 S A -1.4536
15 P A -1.8883
16 T A -1.2622
17 S A -1.1531
18 L A 0.0000
19 Q A -0.8378
20 V A 0.0000
21 S A -1.1533
22 W A 0.0000
23 D A -2.5506
24 A A -1.5511
25 F A 0.0000
26 H A -1.2618
27 R A -0.3288
28 Y A 0.8200
29 H A 0.2037
30 N A -0.6008
31 G A 0.1030
32 F A 1.4432
33 T A 0.6485
34 H A -0.0317
35 P A -0.4856
36 V A -0.9978
37 R A -1.4349
38 Y A -0.7968
39 Y A 0.0000
40 R A -0.8367
41 L A 0.0000
42 T A 0.0000
43 Y A -0.4292
44 G A -0.9019
45 E A -1.8560
46 T A -1.5119
47 G A -1.3929
48 G A -1.5379
49 N A -1.5602
50 S A -0.9344
51 P A -0.4179
52 V A 0.2860
53 Q A -1.2031
54 E A -1.8031
55 F A -0.6712
56 T A -0.1955
57 V A -0.3424
58 P A -0.8653
59 G A -1.1139
60 S A -1.0308
61 K A -1.3123
62 S A -1.1197
63 T A -0.7242
64 A A 0.0000
65 T A -0.3428
66 F A 0.0000
67 S A -0.7505
68 G A -1.0030
69 L A 0.0000
70 K A -2.5742
71 P A -2.1713
72 G A -1.4963
73 V A -1.6526
74 D A -2.9248
75 Y A 0.0000
76 T A -0.8714
77 F A 0.0000
78 T A 0.0000
79 V A 0.0000
80 Y A -0.3273
81 A A 0.0000
82 V A 0.0000
83 T A 0.0000
84 W A 0.5102
85 Y A 0.0000
86 P A -0.3799
87 R A -1.0776
88 Y A 0.7082
89 G A 0.6850
90 Y A 1.1225
91 G A 0.3439
92 E A -0.5799
93 S A 0.0000
94 G A -0.8734
95 P A -0.6087
96 I A 0.0000
97 S A -0.6202
98 V A -0.6271
99 N A -1.5616
100 Y A -1.3574
101 R A -2.3773
102 T A 0.0000
103 E A -2.4311
104 L A -1.3284
105 D A -2.7842
106 K A -2.8354
107 P A -1.8093
108 S A -1.6347
109 Q A -1.6610
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Laboratory of Theory of Biopolymers 2018